KEGG PATHWAY: rpd00630

PATHWAY: rpd00630

Entry

rpd00630 Pathway

Name

Glyoxylate and dicarboxylate metabolism - Rhodopseudomonas palustris BisB5

Class

Metabolism; Carbohydrate metabolism

Pathway map

rpd00630

Glyoxylate and dicarboxylate metabolism

Module

rpd_M00012	Glyoxylate cycle [PATH:rpd00630]
rpd_M00373	Ethylmalonyl pathway [PATH:rpd00630]
rpd_M00532	Photorespiration [PATH:rpd00630]

Organism

Rhodopseudomonas palustris BisB5 [GN:rpd]

Gene

RPD_4053	isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1] [KO:K01637] [EC:4.1.3.1]
RPD_1375	malate synthase G; K01638 malate synthase [EC:2.3.3.9] [KO:K01638] [EC:2.3.3.9]
RPD_0535	malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37] [KO:K00024] [EC:1.1.1.37]
RPD_2843	gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
RPD_0525	aconitate hydratase; K01681 aconitate hydratase 1 / homoaconitase [EC:4.2.1.3 4.2.1.-] [KO:K01681] [EC:4.2.1.- 4.2.1.3]
RPD_3105	acetyl-CoA C-acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
RPD_3115	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
RPD_3306	acetyl-CoA C-acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
RPD_3318	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
RPD_3611	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
RPD_3991	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
RPD_1858	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
RPD_0805	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
RPD_0306	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
RPD_0305	acetoacetyl-CoA reductase; K00023 acetoacetyl-CoA reductase [EC:1.1.1.36] [KO:K00023] [EC:1.1.1.36]
RPD_2869	glyoxalase/bleomycin resistance protein/dioxygenase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] [KO:K05606] [EC:5.1.99.1]
RPD_3093	carbamoyl-phosphate synthase L chain; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] [KO:K01965] [EC:6.4.1.3]
RPD_3122	carboxyl transferase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] [KO:K01966] [EC:6.4.1.3]
RPD_1927	methylmalonyl-CoA mutase; K01847 methylmalonyl-CoA mutase [EC:5.4.99.2] [KO:K01847] [EC:5.4.99.2]
RPD_1929	methylmalonyl-CoA mutase; K01847 methylmalonyl-CoA mutase [EC:5.4.99.2] [KO:K01847] [EC:5.4.99.2]
RPD_4137	D-lactate dehydrogenase (cytochrome); K00104 glycolate oxidase [EC:1.1.3.15] [KO:K00104] [EC:1.1.3.15]
RPD_4136	FAD linked oxidase-like protein; K11472 glycolate oxidase FAD binding subunit [KO:K11472]
RPD_4135	hypothetical protein; K11473 glycolate oxidase iron-sulfur subunit [KO:K11473]
RPD_0617	catalase; K03781 catalase [EC:1.11.1.6] [KO:K03781] [EC:1.11.1.6]
RPD_2054	phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] [KO:K01091] [EC:3.1.3.18]
RPD_1549	rbcL; ribulose bisophosphate carboxylase [KO:K01601] [EC:4.1.1.39]
RPD_3722	rbcL; ribulose bisophosphate carboxylase [KO:K01601] [EC:4.1.1.39]
RPD_1054	ribulose bisphosphate carboxylase; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] [KO:K01601] [EC:4.1.1.39]
RPD_0462	RuBisCO-like protein; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] [KO:K01601] [EC:4.1.1.39]
RPD_2233	RuBisCO-like protein; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] [KO:K01601] [EC:4.1.1.39]
RPD_1548	ribulose-bisphosphate carboxylase; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] [KO:K01602] [EC:4.1.1.39]
RPD_3721	ribulose-bisphosphate carboxylase; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] [KO:K01602] [EC:4.1.1.39]
RPD_0780	Serine--glyoxylate transaminase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] [KO:K00830] [EC:2.6.1.51 2.6.1.45 2.6.1.44]
RPD_2901	glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
RPD_1385	glutamate--ammonia ligase; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
RPD_2305	serine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] [KO:K00600] [EC:2.1.2.1]
RPD_2671	glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RPD_1732	glycine cleavage system protein H; K02437 glycine cleavage system H protein [KO:K02437]
RPD_1855	hydroxypyruvate isomerase; K01816 hydroxypyruvate isomerase [EC:5.3.1.22] [KO:K01816] [EC:5.3.1.22]
RPD_0217	D-isomer specific 2-hydroxyacid dehydrogenase; K00015 glyoxylate reductase [EC:1.1.1.26] [KO:K00015] [EC:1.1.1.26]
RPD_1897	hydroxypyruvate reductase; K00050 hydroxypyruvate reductase [EC:1.1.1.81] [KO:K00050] [EC:1.1.1.81]
RPD_1841	tartrate dehydrogenase; K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] [KO:K07246] [EC:1.1.1.83 4.1.1.73 1.1.1.93]
RPD_0621	putative NAD-dependent formate dehydrogenase subunit delta; K00126 formate dehydrogenase, delta subunit [EC:1.2.1.2] [KO:K00126] [EC:1.2.1.2]
RPD_0623	formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] [KO:K00123] [EC:1.2.1.2]
RPD_0624	NADH dehydrogenase (quinone); K00124 formate dehydrogenase, beta subunit [KO:K00124]
RPD_0625	formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit [KO:K00127]
RPD_1583	purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RPD_3859	formamidase; K01455 formamidase [EC:3.5.1.49] [KO:K01455] [EC:3.5.1.49]

Compound

C00007	Oxygen
C00011	CO2
C00014	NH3
C00022	Pyruvate
C00024	Acetyl-CoA
C00025	L-Glutamate
C00026	2-Oxoglutarate
C00027	Hydrogen peroxide
C00036	Oxaloacetate
C00037	Glycine
C00042	Succinate
C00048	Glyoxylate
C00058	Formate
C00064	L-Glutamine
C00065	L-Serine
C00091	Succinyl-CoA
C00100	Propanoyl-CoA
C00136	Butanoyl-CoA
C00149	(S)-Malate
C00158	Citrate
C00160	Glycolate
C00168	Hydroxypyruvate
C00197	3-Phospho-D-glycerate
C00209	Oxalate
C00258	D-Glycerate
C00266	Glycolaldehyde
C00311	Isocitrate
C00313	Oxalyl-CoA
C00332	Acetoacetyl-CoA
C00417	cis-Aconitate
C00552	meso-Tartaric acid
C00683	(S)-Methylmalonyl-CoA
C00798	Formyl-CoA
C00877	Crotonoyl-CoA
C00888	Pentanoyl-CoA
C00898	(R,R)-Tartaric acid
C00975	Dihydroxyfumarate
C00988	2-Phosphoglycolate
C01127	4-Hydroxy-2-oxoglutarate
C01146	2-Hydroxy-3-oxopropanoate
C01182	D-Ribulose 1,5-bisphosphate
C01213	(R)-Methylmalonyl-CoA
C01380	Ethylene glycol
C01989	3-Ethylmalate
C01990	3-Oxalomalate
C02123	3-Propylmalate
C02405	Formyl phosphate
C03217	2-Hydroxy-3-oxoadipate
C03459	2-Hydroxy-3-oxosuccinate
C03548	trans-2,3-Epoxysuccinate
C03561	(R)-3-Hydroxybutanoyl-CoA
C04348	(3S)-3-Carboxy-3-hydroxypropanoyl-CoA
C06027	L-erythro-3-Methylmalyl-CoA
C06028	Mesaconyl-CoA
C06049	N-Formylderivatives
C18026	(2S)-Ethylmalonyl-CoA
C18324	(2S)-Methylsuccinyl-CoA
C20238	(2R)-Ethylmalonyl-CoA

Reference

PMID:10978349 (EC5.3.1.22)

Authors

Njau RK, Herndon CA, Hawes JW.

Title

Novel beta -hydroxyacid dehydrogenases in Escherichia coli and Haemophilusinfluenzae.

Journal

J Biol Chem 275:38780-6 (2000)

Reference

PMID:18065535

Authors

Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G

Title

Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.

Journal

J Bacteriol 190:1366-74 (2008)

Reference

PMID:18819910

Authors

Erb TJ, Retey J, Fuchs G, Alber BE

Title

Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.

Journal

J Biol Chem 283:32283-93 (2008)

KO pathway

ko00630

All links

Pathway (2)   
   KEGG MODULE (1)   
   BioSystems (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (48)   
   KEGG GENES (48)   
All databases (51)   

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