KEGG   PATHWAY: rpe00362Help
Entry
rpe00362                    Pathway                                

Name
Benzoate degradation - Rhodopseudomonas palustris BisA53
Class
Metabolism; Xenobiotics biodegradation and metabolism
BRITE hierarchy
Pathway map
Benzoate degradation
rpe00362

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BSID: 
UMBBD: 
GO: 
Organism
Rhodopseudomonas palustris BisA53 [GN:rpe]
Gene
3-oxoadipate enol-lactonase [KO:K01055] [EC:3.1.1.24]
beta-ketoadipyl CoA thiolase [KO:K07823] [EC:2.3.1.174]
4-oxalocrotonate tautomerase [KO:K01821] [EC:5.3.2.6]
iron-containing alcohol dehydrogenase [KO:K00217] [EC:1.3.1.32]
Carboxymuconolactone decarboxylase [KO:K01607] [EC:4.1.1.44]
Protocatechuate 4,5-dioxygenase [KO:K04100] [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase [KO:K04101] [EC:1.13.11.8]
oxidoreductase domain protein [KO:K10219] [EC:1.1.1.312]
amidohydrolase 2 [KO:K10221] [EC:3.1.1.57]
methylitaconate delta2-delta3-isomerase [KO:K16514] [EC:5.3.2.8]
amidohydrolase 2 [KO:K10220] [EC:4.2.1.83]
Dimethylmenaquinone methyltransferase [KO:K10218] [EC:4.1.3.17]
4-hydroxybenzoate 3-monooxygenase [KO:K00481] [EC:1.14.13.2]
benzoate-CoA ligase [KO:K04105] [EC:6.2.1.25 6.2.1.27]
thioesterase superfamily protein [KO:K01075] [EC:3.1.2.23]
4-hydroxybenzoyl-CoA reductase gamma subunit [KO:K04107] [EC:1.3.7.9]
4-hydroxybenzoyl-CoA reductase alpha subunit [KO:K04108] [EC:1.3.7.9]
4-hydroxybenzoyl-CoA reductase beta subunit [KO:K04109] [EC:1.3.7.9]
benzoate-CoA ligase [KO:K04110] [EC:6.2.1.25]
benzoyl-CoA reductase (4-electron) gamma subunit [KO:K04112] [EC:1.3.7.8]
benzoyl-CoA reductase (4-electron) beta subunit [KO:K04113] [EC:1.3.7.8]
benzoyl-CoA reductase (4-electron) alpha subunit [KO:K04114] [EC:1.3.7.8]
benzoyl-CoA reductase (4-electron) delta subunit [KO:K04115] [EC:1.3.7.8]
AMP-dependent synthetase and ligase [KO:K04116] [EC:6.2.1.-]
acyl-CoA dehydrogenase domain protein [KO:K04117] [EC:1.3.99.-]
2-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase [KO:K07535] [EC:1.1.1.-]
2-ketocyclohexane 1-carbonyl-CoA hydrolase [KO:K07536] [EC:3.1.2.-]
3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein [KO:K01782] [EC:5.1.2.3 4.2.1.17 1.1.1.35]
short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [KO:K07516] [EC:1.1.1.35]
acyl-CoA dehydrogenase domain protein [KO:K00252] [EC:1.3.8.6]
short chain enoyl-CoA hydratase [KO:K01692] [EC:4.2.1.17]
cyclohex-1-ene 1-carbonyl-CoA hydratase [KO:K01692] [EC:4.2.1.17]
Enoyl-CoA hydratase/isomerase [KO:K01692] [EC:4.2.1.17]
3-hydroxyacyl-CoA dehydrogenase [KO:K00074] [EC:1.1.1.157]
acetyl-CoA acetyltransferases [KO:K00626] [EC:2.3.1.9]
acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
acetyl-CoA acetyltransferases [KO:K00626] [EC:2.3.1.9]
acetyl-CoA acetyltransferases [KO:K00626] [EC:2.3.1.9]
Thiolase [KO:K00626] [EC:2.3.1.9]
acetyl-CoA acetyltransferases [KO:K00626] [EC:2.3.1.9]
benzoyl-CoA oxygenase, component B [KO:K15512] [EC:1.14.13.208]
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme [KO:K15513] [EC:4.1.2.44]
Compound
C00022  
Pyruvate
C00024  
Acetyl-CoA
C00036  
Oxaloacetate
C00084  
Acetaldehyde
C00090  
Catechol
C00091  
Succinyl-CoA
C00146  
Phenol
C00156  
4-Hydroxybenzoate
C00180  
Benzoate
C00196  
2,3-Dihydroxybenzoate
C00230  
3,4-Dihydroxybenzoate
C00332  
Acetoacetyl-CoA
C00512  
Benzoyl-CoA
C00527  
Glutaryl-CoA
C00530  
Hydroquinone
C00587  
3-Hydroxybenzoate
C00596  
2-Hydroxy-2,4-pentadienoate
C00628  
2,5-Dihydroxybenzoate
C00682  
2-Hydroxymuconate semialdehyde
C00846  
3-Oxoadipate
C00877  
Crotonoyl-CoA
C01063  
6-Carboxyhexanoyl-CoA
C01144  
(S)-3-Hydroxybutanoyl-CoA
C01163  
3-Carboxy-cis,cis-muconate
C01278  
2-Carboxy-2,5-dihydro-5-oxofuran-2-acetate
C01407  
Benzene
C01751  
Resorcinol
C02222  
2-Maleylacetate
C02232  
3-Oxoadipyl-CoA
C02411  
Glutaconyl-1-CoA
C02480  
cis,cis-Muconate
C02501  
2-Hydroxymuconate
C02519  
4-Methoxybenzoate
C02814  
Benzene-1,2,4-triol
C02949  
4-Hydroxybenzoyl-CoA
C03453  
gamma-Oxalocrotonate
C03586  
2-Oxo-2,3-dihydrofuran-5-acetate
C03589  
4-Hydroxy-2-oxopentanoate
C03671  
2-Pyrone-4,6-dicarboxylate
C03676  
3-Hydroxy-cis,cis-muconate
C04091  
cis-1,2-Dihydrobenzene-1,2-diol
C04115  
4-Carboxy-4-hydroxy-2-oxoadipate
C04324  
(1E,3E)-4-Hydroxybuta-1,3-diene-1,2,4-tricarboxylate
C04434  
(1E)-4-Oxobut-1-ene-1,2,4-tricarboxylate
C04480  
3-Carboxy-2-hydroxymuconate semialdehyde
C04484  
4-Carboxy-2-hydroxymuconate semialdehyde
C04553  
3-Carboxy-2,5-dihydro-5-oxofuran-2-acetate
C05375  
2-Hydroxy-2-hydropyrone-4,6-dicarboxylate
C06033  
Parapyruvate
C06035  
4-Methylene-2-oxoglutarate
C06321  
(1R,6S)-1,6-Dihydroxycyclohexa-2,4-diene-1-carboxylate
C06322  
Cyclohexa-1,5-diene-1-carbonyl-CoA
C06333  
2-Aminobenzenesulfonate
C06336  
3-Sulfocatechol
C06714  
3-Hydroxypimeloyl-CoA
C06715  
3-Oxopimeloyl-CoA
C06723  
6-Carboxyhex-2-enoyl-CoA
C06749  
6-Hydroxycyclohex-1-ene-1-carbonyl-CoA
C09809  
Cyclohex-2,5-diene-1-carboxyl-CoA
C09810  
Cyclohex-1,4-diene-1-carboxyl-CoA
C09811  
Cyclohex-1-ene-1-carboxyl-CoA
C09812  
2-Hydroxycyclohexane-1-carboxyl-CoA
C09813  
2-Ketocyclohexane-1-carboxyl-CoA
C09821  
6-Oxocyclohex-1-ene-1-carbonyl-CoA
C09822  
Cyclohexane-1-carboxylate
C09823  
Cyclohexane-1-carboxyl-CoA
C14144  
5-Carboxy-2-pentenoyl-CoA
C14610  
(S)-5-Oxo-2,5-dihydrofuran-2-acetate
C19682  
3,4-Didehydroadipyl-CoA
C19683  
3,4-Didehydroadipyl-CoA semialdehyde
C19684  
2,3-Epoxy-2,3-dihydrobenzoyl-CoA
C21298  
2,6-Dihydroxybenzoate
Reference
  Authors
Carmona M, Zamarro MT, Blazquez B, Durante-Rodriguez G, Juarez JF, Valderrama JA, Barragan MJ, Garcia JL, Diaz E
  Title
Anaerobic catabolism of aromatic compounds: a genetic and genomic view.
  Journal
Microbiol Mol Biol Rev 73:71-133 (2009)
DOI:10.1128/MMBR.00021-08
Reference
  Authors
Hara H, Masai E, Miyauchi K, Katayama Y, Fukuda M.
  Title
Characterization of the 4-carboxy-4-hydroxy-2-oxoadipate aldolase gene and operon structure of the protocatechuate 4,5-cleavage pathway genes in Sphingomonas paucimobilis SYK-6.
  Journal
J Bacteriol 185:41-50 (2003)
DOI:10.1128/JB.185.1.41-50.2003
Reference
  Authors
Maruyama K, Shibayama T, Ichikawa A, Sakou Y, Yamada S, Sugisaki H.
  Title
Cloning and characterization of the genes encoding enzymes for the protocatechuate meta-degradation pathway of Pseudomonas ochraceae NGJ1.
  Journal
Biosci Biotechnol Biochem 68:1434-41 (2004)
DOI:10.1271/bbb.68.1434
Reference
  Authors
Mampel J, Ruff J, Junker F, Cook AM.
  Title
The oxygenase component of the 2-aminobenzenesulfonate dioxygenase system from Alcaligenes sp. strain O-1.
  Journal
Microbiology 145 ( Pt 11):3255-64 (1999)
DOI:10.1099/00221287-145-11-3255
Reference
PMID:8002948
  Authors
Junker F, Field JA, Bangerter F, Ramsteiner K, Kohler HP, Joannou CL, Mason JR, Leisinger T, Cook AM.
  Title
Oxygenation and spontaneous deamination of 2-aminobenzenesulphonic acid in Alcaligenes sp. strain O-1 with subsequent meta ring cleavage and spontaneous desulphonation to 2-hydroxymuconic acid.
  Journal
Biochem J 300 ( Pt 2):429-36 (1994)
DOI:10.1042/bj3000429
Reference
PMID:8990279
  Authors
Harwood CS, Gibson J.
  Title
Shedding light on anaerobic benzene ring degradation: a process unique to prokaryotes?
  Journal
J Bacteriol 179:301-9 (1997)
DOI:10.1128/JB.179.2.301-309.1997
Reference
  Authors
Peters F, Shinoda Y, McInerney MJ, Boll M.
  Title
Cyclohexa-1,5-diene-1-carbonyl-coenzyme A (CoA) hydratases of Geobacter metallireducens and Syntrophus aciditrophicus: Evidence for a common benzoyl-CoA degradation pathway in facultative and strict anaerobes.
  Journal
J Bacteriol 189:1055-60 (2007)
DOI:10.1128/JB.01467-06
Reference
  Authors
Cowles CE, Nichols NN, Harwood CS.
  Title
BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putida.
  Journal
J Bacteriol 182:6339-46 (2000)
DOI:10.1128/JB.182.22.6339-6346.2000
Reference
  Authors
Smith MA, Weaver VB, Young DM, Ornston LN.
  Title
Genes for chlorogenate and hydroxycinnamate catabolism (hca) are linked to functionally related genes in the dca-pca-qui-pob-hca chromosomal cluster of Acinetobacter sp. strain ADP1.
  Journal
Appl Environ Microbiol 69:524-32 (2003)
DOI:10.1128/AEM.69.1.524-532.2003
Reference
  Authors
Kuntze K, Shinoda Y, Moutakki H, McInerney MJ, Vogt C, Richnow HH, Boll M
  Title
6-Oxocyclohex-1-ene-1-carbonyl-coenzyme A hydrolases from obligately anaerobic bacteria: characterization and identification of its gene as a functional marker for aromatic compounds degrading anaerobes.
  Journal
Environ Microbiol 10:1547-56 (2008)
DOI:10.1111/j.1462-2920.2008.01570.x
Reference
  Authors
Pelletier DA, Harwood CS
  Title
2-Hydroxycyclohexanecarboxyl coenzyme A dehydrogenase, an enzyme characteristic of the anaerobic benzoate degradation pathway used by Rhodopseudomonas palustris.
  Journal
J Bacteriol 182:2753-60 (2000)
DOI:10.1128/JB.182.10.2753-2760.2000
Reference
  Authors
Elshahed MS, Bhupathiraju VK, Wofford NQ, Nanny MA, McInerney MJ
  Title
Metabolism of benzoate, cyclohex-1-ene carboxylate, and cyclohexane carboxylate by "Syntrophus aciditrophicus" strain SB in syntrophic association with H(2)-using microorganisms.
  Journal
Appl Environ Microbiol 67:1728-38 (2001)
DOI:10.1128/AEM.67.4.1728-1738.2001
Reference
  Authors
Nogales J, Canales A, Jimenez-Barbero J, Serra B, Pingarron JM, Garcia JL, Diaz E
  Title
Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida.
  Journal
Mol Microbiol 79:359-74 (2011)
DOI:10.1111/j.1365-2958.2010.07448.x
KO pathway
 

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