KEGG   PATHWAY: sap00020
Entry
sap00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfobacillus acidophilus DSM 10332
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sap00020  Citrate cycle (TCA cycle)
sap00020

Module
sap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sap00020]
sap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sap00020]
Other DBs
GO: 0006099
Organism
Sulfobacillus acidophilus DSM 10332 [GN:sap]
Gene
Sulac_2524  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Sulac_2003  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Sulac_1332  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Sulac_1827  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Sulac_1826  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Sulac_1677  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sulac_3484  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sulac_0942  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sulac_3184  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Sulac_3185  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Sulac_1336  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Sulac_1335  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Sulac_1552  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Sulac_1553  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Sulac_2806  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Sulac_1333  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Sulac_1674  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
Sulac_1675  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
Sulac_1676  Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sap00010  Glycolysis / Gluconeogenesis
sap00053  Ascorbate and aldarate metabolism
sap00061  Fatty acid biosynthesis
sap00071  Fatty acid degradation
sap00190  Oxidative phosphorylation
sap00220  Arginine biosynthesis
sap00250  Alanine, aspartate and glutamate metabolism
sap00280  Valine, leucine and isoleucine degradation
sap00350  Tyrosine metabolism
sap00470  D-Amino acid metabolism
sap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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