KEGG PATHWAY: sbn00240

PATHWAY: sbn00240

Entry

sbn00240 Pathway

Name

Pyrimidine metabolism - Shewanella baltica OS195

Class

Metabolism; Nucleotide metabolism

Pathway map

sbn00240

Pyrimidine metabolism

Module

sbn_M00046	Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:sbn00240]
sbn_M00051	Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP [PATH:sbn00240]
sbn_M00052	Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sbn00240]
sbn_M00053	Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP [PATH:sbn00240]

Other DBs

BSID:

60983

GO:

0006220

Organism

Shewanella baltica OS195 [GN:sbn]

Gene

Sbal195_3525	carB; carbamoyl phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
Sbal195_3526	carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] [KO:K01956] [EC:6.3.5.5]
Sbal195_1238	aspartate carbamoyltransferase; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] [KO:K00609] [EC:2.1.3.2]
Sbal195_1028	dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3] [KO:K01465] [EC:3.5.2.3]
Sbal195_2552	dihydroorotate dehydrogenase 2; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] [KO:K00226] [EC:1.3.98.1]
Sbal195_0382	pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
Sbal195_2392	orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] [KO:K01591] [EC:4.1.1.23]
Sbal195_2397	cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.14]
Sbal195_1483	pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
Sbal195_2493	ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
Sbal195_3412	polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] [KO:K00962] [EC:2.7.7.8]
Sbal195_3188	putative deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] [KO:K02428] [EC:3.6.1.19]
Sbal195_3280	pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
Sbal195_0224	DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] [KO:K03040] [EC:2.7.7.6]
Sbal195_0193	rpoB; DNA-directed RNA polymerase subunit beta [KO:K03043] [EC:2.7.7.6]
Sbal195_0194	DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] [KO:K03046] [EC:2.7.7.6]
Sbal195_0359	rpoZ; DNA-directed RNA polymerase subunit omega [KO:K03060] [EC:2.7.7.6]
Sbal195_4485	DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] [KO:K02335] [EC:2.7.7.7]
Sbal195_1496	dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
Sbal195_0002	DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] [KO:K02338] [EC:2.7.7.7]
Sbal195_2690	DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] [KO:K02343] [EC:2.7.7.7]
Sbal195_3449	DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] [KO:K02340] [EC:2.7.7.7]
Sbal195_2571	DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] [KO:K02341] [EC:2.7.7.7]
Sbal195_2460	DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] [KO:K02342] [EC:2.7.7.7]
Sbal195_2063	DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] [KO:K02342] [EC:2.7.7.7]
Sbal195_2750	exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] [KO:K02342] [EC:2.7.7.7]
Sbal195_3263	DNA polymerase III chi subunit HolC; K02339 DNA polymerase III subunit chi [EC:2.7.7.7] [KO:K02339] [EC:2.7.7.7]
Sbal195_2575	dcd; deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
Sbal195_2576	uridine kinase; K00876 uridine kinase [EC:2.7.1.48] [KO:K00876] [EC:2.7.1.48]
Sbal195_3153	5'-nucleotidase domain-containing protein; K01081 5'-nucleotidase [EC:3.1.3.5] [KO:K01081] [EC:3.1.3.5]
Sbal195_2700	ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic [KO:K11751] [EC:3.6.1.45 3.1.3.5]
Sbal195_3274	surE; stationary phase survival protein SurE [KO:K03787] [EC:3.1.3.5]
Sbal195_2185	hypothetical protein; K08722 5'-nucleotidase [EC:3.1.3.5] [KO:K08722] [EC:3.1.3.5]
Sbal195_0545	purine phosphorylase family 1; K00757 uridine phosphorylase [EC:2.4.2.3] [KO:K00757] [EC:2.4.2.3]
Sbal195_0488	uridine phosphorylase; K00757 uridine phosphorylase [EC:2.4.2.3] [KO:K00757] [EC:2.4.2.3]
Sbal195_1774	upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
Sbal195_3229	cytosine deaminase; K01485 cytosine deaminase [EC:3.5.4.1] [KO:K01485] [EC:3.5.4.1]
Sbal195_3281	mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.8]
Sbal195_2326	thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
Sbal195_1687	anaerobic ribonucleoside triphosphate reductase; K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2] [KO:K00527] [EC:1.17.4.2]
Sbal195_2407	ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] [KO:K00525] [EC:1.17.4.1]
Sbal195_2408	nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
Sbal195_0386	dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
Sbal195_1265	thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
Sbal195_1716	cytidine deaminase; K01489 cytidine deaminase [EC:3.5.4.5] [KO:K01489] [EC:3.5.4.5]
Sbal195_3365	deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
Sbal195_3363	deoD; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
Sbal195_1838	purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase [EC:2.4.2.1] [KO:K03784] [EC:2.4.2.1]
Sbal195_2990	thymidine kinase; K00857 thymidine kinase [EC:2.7.1.21] [KO:K00857] [EC:2.7.1.21]
Sbal195_2572	tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
Sbal195_2744	cpdB; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein [KO:K01119] [EC:3.1.4.16]

Compound

C00015	UDP
C00029	UDP-glucose
C00039	DNA
C00046	RNA
C00055	CMP
C00063	CTP
C00064	L-Glutamine
C00075	UTP
C00086	Urea
C00099	beta-Alanine
C00105	UMP
C00106	Uracil
C00112	CDP
C00119	5-Phospho-alpha-D-ribose 1-diphosphate
C00169	Carbamoyl phosphate
C00178	Thymine
C00214	Thymidine
C00222	3-Oxopropanoate
C00239	dCMP
C00295	Orotate
C00299	Uridine
C00337	(S)-Dihydroorotate
C00342	Thioredoxin
C00343	Thioredoxin disulfide
C00363	dTDP
C00364	dTMP
C00365	dUMP
C00380	Cytosine
C00383	Malonate
C00429	5,6-Dihydrouracil
C00438	N-Carbamoyl-L-aspartate
C00458	dCTP
C00459	dTTP
C00460	dUTP
C00475	Cytidine
C00526	Deoxyuridine
C00672	2-Deoxy-D-ribose 1-phosphate
C00705	dCDP
C00813	Barbiturate
C00881	Deoxycytidine
C00906	5,6-Dihydrothymine
C01013	3-Hydroxypropanoate
C01103	Orotidine 5'-phosphate
C01168	Pseudouridine 5'-phosphate
C01346	dUDP
C01368	3'-UMP
C01563	Carbamate
C02067	Pseudouridine
C02170	Methylmalonate
C02354	2',3'-Cyclic CMP
C02355	2',3'-Cyclic UMP
C02376	5-Methylcytosine
C02642	3-Ureidopropionate
C03997	5-Hydroxymethyldeoxycytidylate
C05100	3-Ureidoisobutyrate
C05145	3-Aminoisobutyric acid
C05281	5-Methylbarbiturate
C05822	3'-CMP
C06198	P1,P4-Bis(5'-uridyl) tetraphosphate
C11038	2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039	2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607	3-Oxo-3-ureidopropanoate
C20231	(Z)-3-Ureidoacrylate peracid
C20249	(Z)-3-Peroxyaminoacrylate
C20253	Aminoacrylate
C20254	Ureidoacrylate

KO pathway

ko00240

All links

Pathway (3)   
   KEGG MODULE (2)   
   BioSystems (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG GENES (51)   
All databases (55)   

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