KEGG   PATHWAY: sem01100
Entry
sem01100                    Pathway                                
Name
Metabolic pathways - Salmonella enterica subsp. enterica serovar Typhimurium T000240
Class
Pathway map
sem01100  Metabolic pathways
sem01100

Module
sem_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:sem01100]
sem_M00002  Glycolysis, core module involving three-carbon compounds [PATH:sem01100]
sem_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sem01100]
sem_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sem01100]
sem_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sem01100]
sem_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sem01100]
sem_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sem01100]
sem_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sem01100]
sem_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sem01100]
sem_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sem01100]
sem_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sem01100]
sem_M00012  Glyoxylate cycle [PATH:sem01100]
sem_M00015  Proline biosynthesis, glutamate => proline [PATH:sem01100]
sem_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:sem01100]
sem_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:sem01100]
sem_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:sem01100]
sem_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:sem01100]
sem_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:sem01100]
sem_M00021  Cysteine biosynthesis, serine => cysteine [PATH:sem01100]
sem_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:sem01100]
sem_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:sem01100]
sem_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:sem01100]
sem_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:sem01100]
sem_M00026  Histidine biosynthesis, PRPP => histidine [PATH:sem01100]
sem_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:sem01100]
sem_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:sem01100]
sem_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sem01100]
sem_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sem01100]
sem_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sem01100]
sem_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:sem01100]
sem_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sem01100]
sem_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sem01100]
sem_M00060  KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:sem01100]
sem_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sem01100]
sem_M00063  CMP-KDO biosynthesis [PATH:sem01100]
sem_M00064  ADP-L-glycero-D-manno-heptose biosynthesis [PATH:sem01100]
sem_M00082  Fatty acid biosynthesis, initiation [PATH:sem01100]
sem_M00083  Fatty acid biosynthesis, elongation [PATH:sem01100]
sem_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:sem01100]
sem_M00087  beta-Oxidation [PATH:sem01100]
sem_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:sem01100]
sem_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:sem01100]
sem_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:sem01100]
sem_M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:sem01100]
sem_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:sem01100]
sem_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:sem01100]
sem_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:sem01100]
sem_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:sem01100]
sem_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:sem01100]
sem_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:sem01100]
sem_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:sem01100]
sem_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:sem01100]
sem_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:sem01100]
sem_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:sem01100]
sem_M00127  Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:sem01100]
sem_M00133  Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:sem01100]
sem_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:sem01100]
sem_M00149  Succinate dehydrogenase, prokaryotes [PATH:sem01100]
sem_M00150  Fumarate reductase, prokaryotes [PATH:sem01100]
sem_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:sem01100]
sem_M00168  CAM (Crassulacean acid metabolism), dark [PATH:sem01100]
sem_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:sem01100]
sem_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sem01100]
sem_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:sem01100]
sem_M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:sem01100]
sem_M00417  Cytochrome o ubiquinol oxidase [PATH:sem01100]
sem_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:sem01100]
sem_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:sem01100]
sem_M00533  Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:sem01100]
sem_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:sem01100]
sem_M00550  Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:sem01100]
sem_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:sem01100]
sem_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:sem01100]
sem_M00565  Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:sem01100]
sem_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:sem01100]
sem_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:sem01100]
sem_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:sem01100]
sem_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:sem01100]
sem_M00621  Glycine cleavage system [PATH:sem01100]
sem_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:sem01100]
sem_M00761  Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:sem01100]
sem_M00793  dTDP-L-rhamnose biosynthesis [PATH:sem01100]
sem_M00844  Arginine biosynthesis, ornithine => arginine [PATH:sem01100]
sem_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:sem01100]
sem_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:sem01100]
sem_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:sem01100]
sem_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:sem01100]
sem_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:sem01100]
sem_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sem01100]
sem_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:sem01100]
sem_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:sem01100]
sem_M00918  Aerobactin biosynthesis, lysine => aerobactin [PATH:sem01100]
sem_M00924  Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:sem01100]
sem_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sem01100]
sem_M00956  Lysine degradation, bacteria, L-lysine => succinate [PATH:sem01100]
sem_M00970  Proline degradation, proline => glutamate [PATH:sem01100]
Organism
Salmonella enterica subsp. enterica serovar Typhimurium T000240 [GN:sem]
Related
pathway
sem00010  Glycolysis / Gluconeogenesis
sem00020  Citrate cycle (TCA cycle)
sem00030  Pentose phosphate pathway
sem00040  Pentose and glucuronate interconversions
sem00051  Fructose and mannose metabolism
sem00052  Galactose metabolism
sem00053  Ascorbate and aldarate metabolism
sem00061  Fatty acid biosynthesis
sem00071  Fatty acid degradation
sem00130  Ubiquinone and other terpenoid-quinone biosynthesis
sem00190  Oxidative phosphorylation
sem00220  Arginine biosynthesis
sem00230  Purine metabolism
sem00240  Pyrimidine metabolism
sem00250  Alanine, aspartate and glutamate metabolism
sem00260  Glycine, serine and threonine metabolism
sem00261  Monobactam biosynthesis
sem00270  Cysteine and methionine metabolism
sem00280  Valine, leucine and isoleucine degradation
sem00290  Valine, leucine and isoleucine biosynthesis
sem00300  Lysine biosynthesis
sem00310  Lysine degradation
sem00330  Arginine and proline metabolism
sem00332  Carbapenem biosynthesis
sem00340  Histidine metabolism
sem00350  Tyrosine metabolism
sem00360  Phenylalanine metabolism
sem00361  Chlorocyclohexane and chlorobenzene degradation
sem00362  Benzoate degradation
sem00364  Fluorobenzoate degradation
sem00380  Tryptophan metabolism
sem00400  Phenylalanine, tyrosine and tryptophan biosynthesis
sem00401  Novobiocin biosynthesis
sem00410  beta-Alanine metabolism
sem00430  Taurine and hypotaurine metabolism
sem00440  Phosphonate and phosphinate metabolism
sem00450  Selenocompound metabolism
sem00460  Cyanoamino acid metabolism
sem00470  D-Amino acid metabolism
sem00480  Glutathione metabolism
sem00500  Starch and sucrose metabolism
sem00520  Amino sugar and nucleotide sugar metabolism
sem00521  Streptomycin biosynthesis
sem00523  Polyketide sugar unit biosynthesis
sem00525  Acarbose and validamycin biosynthesis
sem00540  Lipopolysaccharide biosynthesis
sem00541  O-Antigen nucleotide sugar biosynthesis
sem00542  O-Antigen repeat unit biosynthesis
sem00543  Exopolysaccharide biosynthesis
sem00550  Peptidoglycan biosynthesis
sem00552  Teichoic acid biosynthesis
sem00561  Glycerolipid metabolism
sem00562  Inositol phosphate metabolism
sem00564  Glycerophospholipid metabolism
sem00565  Ether lipid metabolism
sem00592  alpha-Linolenic acid metabolism
sem00600  Sphingolipid metabolism
sem00620  Pyruvate metabolism
sem00623  Toluene degradation
sem00625  Chloroalkane and chloroalkene degradation
sem00626  Naphthalene degradation
sem00627  Aminobenzoate degradation
sem00630  Glyoxylate and dicarboxylate metabolism
sem00633  Nitrotoluene degradation
sem00640  Propanoate metabolism
sem00643  Styrene degradation
sem00650  Butanoate metabolism
sem00660  C5-Branched dibasic acid metabolism
sem00670  One carbon pool by folate
sem00680  Methane metabolism
sem00730  Thiamine metabolism
sem00740  Riboflavin metabolism
sem00750  Vitamin B6 metabolism
sem00760  Nicotinate and nicotinamide metabolism
sem00770  Pantothenate and CoA biosynthesis
sem00780  Biotin metabolism
sem00785  Lipoic acid metabolism
sem00790  Folate biosynthesis
sem00860  Porphyrin metabolism
sem00900  Terpenoid backbone biosynthesis
sem00907  Pinene, camphor and geraniol degradation
sem00910  Nitrogen metabolism
sem00920  Sulfur metabolism
sem00930  Caprolactam degradation
sem00946  Degradation of flavonoids
sem00997  Biosynthesis of various other secondary metabolites
sem00999  Biosynthesis of various plant secondary metabolites
sem01040  Biosynthesis of unsaturated fatty acids
sem01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   

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