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Entry
sfd00970                    Pathway                                

Name
Aminoacyl-tRNA biosynthesis - Sinorhizobium fredii USDA 257
Class
Genetic Information Processing; Translation
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Pathway map
Aminoacyl-tRNA biosynthesis
sfd00970

All organismsOrtholog table
Module
Aminoacyl-tRNA biosynthesis, prokaryotes [PATH:sfd00970]
Organism
Sinorhizobium fredii USDA 257 [GN:sfd]
Gene
trnA5; tRNA-Ala [KO:K14218]
trnA1; tRNA-Ala [KO:K14218]
trnA2; tRNA-Ala [KO:K14218]
trnA3; tRNA-Ala [KO:K14218]
trnA4; tRNA-Ala [KO:K14218]
trnR1; tRNA-Arg [KO:K14219]
trnR2; tRNA-Arg [KO:K14219]
trnR3; tRNA-Arg [KO:K14219]
trnR4; tRNA-Arg [KO:K14219]
trnN; tRNA-Asn [KO:K14220]
trnD1; tRNA-Asp [KO:K14221]
trnD2; tRNA-Asp [KO:K14221]
trnC; tRNA-Cys [KO:K14222]
trnQ1; tRNA-Gln [KO:K14223]
trnQ2; tRNA-Gln [KO:K14223]
trnE1; tRNA-Glu [KO:K14224]
trnE3; tRNA-Glu [KO:K14224]
trnE2; tRNA-Glu [KO:K14224]
trnE4; tRNA-Glu [KO:K14224]
trnG2; tRNA-Gly [KO:K14225]
trnG1; tRNA-Gly [KO:K14225]
trnG3; tRNA-Gly [KO:K14225]
trnH; tRNA-His [KO:K14226]
trnI1; tRNA-Ile [KO:K14227]
trnI2; tRNA-Ile [KO:K14227]
trnI3; tRNA-Ile [KO:K14227]
trnL5; tRNA-Leu [KO:K14228]
trnL1; tRNA-Leu [KO:K14228]
trnL2; tRNA-Leu [KO:K14228]
trnL3; tRNA-Leu [KO:K14228]
trnL4; tRNA-Leu [KO:K14228]
trnK1; tRNA-Lys [KO:K14229]
trnK2; tRNA-Lys [KO:K14229]
trnM3; tRNA-Met [KO:K14230]
trnM2; tRNA-Met [KO:K14230]
trnM5; tRNA-Met [KO:K14230]
trnM4; tRNA-Met [KO:K14230]
trnM1; tRNA-Met [KO:K14230]
trnF; tRNA-Phe [KO:K14231]
trnP1; tRNA-Pro [KO:K14232]
trnP2; tRNA-Pro [KO:K14232]
trnP3; tRNA-Pro [KO:K14232]
trnS4; tRNA-Ser [KO:K14233]
trnS2; tRNA-Ser [KO:K14233]
trnS1; tRNA-Ser [KO:K14233]
trnS3; tRNA-Ser [KO:K14233]
trnT1; tRNA-Thr [KO:K14234]
trnT2; tRNA-Thr [KO:K14234]
trnT3; tRNA-Thr [KO:K14234]
trnW; tRNA-Trp [KO:K14235]
trnY; tRNA-Tyr [KO:K14236]
trnV1; tRNA-Val [KO:K14237]
trnV2; tRNA-Val [KO:K14237]
gltX; glutamate--tRNA ligase GltX [KO:K01885] [EC:6.1.1.17]
glutamyl-tRNA amidotransferase subunit A protein; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] [KO:K02433] [EC:6.3.5.7 6.3.5.6]
gatA3; glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.7 6.3.5.6]
gatA2; glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.7 6.3.5.6]
gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [KO:K02434] [EC:6.3.5.7 6.3.5.6]
gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [KO:K02435] [EC:6.3.5.7 6.3.5.6]
alaS; alanine--tRNA ligase AlaS [KO:K01872] [EC:6.1.1.7]
aspS; aspartate--tRNA ligase AspS [KO:K01876] [EC:6.1.1.12]
glyQ; glycine--tRNA ligase alpha subunit GlyQ [KO:K01878] [EC:6.1.1.14]
glyS; glycine--tRNA ligase beta subunit GlyS [KO:K01879] [EC:6.1.1.14]
thrS; threonine--tRNA ligase ThrS [KO:K01868] [EC:6.1.1.3]
serS; serine--tRNA ligase SerS [KO:K01875] [EC:6.1.1.11]
mTH; hypothetical protein [KO:K01042] [EC:2.9.1.1]
cysS; cysteine--tRNA ligase CysS [KO:K01883] [EC:6.1.1.16]
metG; methionine--tRNA ligase MetG [KO:K01874] [EC:6.1.1.10]
fmt1; methionyl-tRNA formyltransferase Fmt [KO:K00604] [EC:2.1.2.9]
fmt2; methionyl-tRNA formyltransferase Fmt [KO:K00604] [EC:2.1.2.9]
valS; valine--tRNA ligase ValS [KO:K01873] [EC:6.1.1.9]
leuS; leucine--tRNA ligase LeuS [KO:K01869] [EC:6.1.1.4]
ileS; isoleucine--tRNA ligase IleS [KO:K01870] [EC:6.1.1.5]
lysS; lysine--tRNA ligase LysS [KO:K04567] [EC:6.1.1.6]
yjeA; hypothetical protein [KO:K04568] [EC:6.1.1.6]
argS; arginine--tRNA ligase ArgS [KO:K01887] [EC:6.1.1.19]
proS; proline--tRNA ligase ProS [KO:K01881] [EC:6.1.1.15]
hisS; histidine--tRNA ligase HisS [KO:K01892] [EC:6.1.1.21]
pheS; phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
pheT; phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
tyrS; tyrosine--tRNA ligase TyrS [KO:K01866] [EC:6.1.1.1]
trpS; tryptophan--tRNA ligase TrpS [KO:K01867] [EC:6.1.1.2]
Compound
C00025  
L-Glutamate
C00037  
Glycine
C00041  
L-Alanine
C00047  
L-Lysine
C00049  
L-Aspartate
C00062  
L-Arginine
C00064  
L-Glutamine
C00065  
L-Serine
C00073  
L-Methionine
C00078  
L-Tryptophan
C00079  
L-Phenylalanine
C00082  
L-Tyrosine
C00097  
L-Cysteine
C00101  
Tetrahydrofolate
C00123  
L-Leucine
C00135  
L-Histidine
C00148  
L-Proline
C00152  
L-Asparagine
C00183  
L-Valine
C00188  
L-Threonine
C00234  
10-Formyltetrahydrofolate
C00407  
L-Isoleucine
C00886  
L-Alanyl-tRNA
C01005  
O-Phospho-L-serine
C01931  
L-Lysyl-tRNA
C02047  
L-Leucyl-tRNA
C02163  
L-Arginyl-tRNA(Arg)
C02282  
Glutaminyl-tRNA
C02412  
Glycyl-tRNA(Gly)
C02430  
L-Methionyl-tRNA
C02553  
L-Seryl-tRNA(Ser)
C02554  
L-Valyl-tRNA(Val)
C02702  
L-Prolyl-tRNA(Pro)
C02839  
L-Tyrosyl-tRNA(Tyr)
C02984  
L-Aspartyl-tRNA(Asp)
C02987  
L-Glutamyl-tRNA(Glu)
C02988  
L-Histidyl-tRNA(His)
C02992  
L-Threonyl-tRNA(Thr)
C03125  
L-Cysteinyl-tRNA(Cys)
C03127  
L-Isoleucyl-tRNA(Ile)
C03294  
N-Formylmethionyl-tRNA
C03402  
L-Asparaginyl-tRNA(Asn)
C03511  
L-Phenylalanyl-tRNA(Phe)
C03512  
L-Tryptophanyl-tRNA(Trp)
C06112  
L-Glutamyl-tRNA(Gln)
C06113  
L-Aspartyl-tRNA(Asn)
C06481  
L-Seryl-tRNA(Sec)
C06482  
L-Selenocysteinyl-tRNA(Sec)
C16138  
L-Pyrrolysine
C16638  
O-Phosphoseryl-tRNA(Sec)
C17022  
O-Phosphoseryl-tRNA(Cys)
C17027  
L-Pyrrolysyl-tRNA(Pyl)
Reference
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
Reference
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
KO pathway
 

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