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Entry
sfd00970                    Pathway                                

Name
Aminoacyl-tRNA biosynthesis - Sinorhizobium fredii USDA 257
Class
Genetic Information Processing; Translation
BRITE hierarchy
Pathway map
sfd00970  Aminoacyl-tRNA biosynthesis
sfd00970

Ortholog table
Module
sfd_M00360  Aminoacyl-tRNA biosynthesis, prokaryotes [PATH:sfd00970]
Organism
Sinorhizobium fredii USDA 257 [GN:sfd]
Gene
USDA257_c60930  trnA5; tRNA-Ala [KO:K14218]
USDA257_c37630  trnA1; tRNA-Ala [KO:K14218]
USDA257_c50160  trnA2; tRNA-Ala [KO:K14218]
USDA257_c54530  trnA3; tRNA-Ala [KO:K14218]
USDA257_c59370  trnA4; tRNA-Ala [KO:K14218]
USDA257_c00850  trnR1; tRNA-Arg [KO:K14219]
USDA257_c36210  trnR2; tRNA-Arg [KO:K14219]
USDA257_c47850  trnR3; tRNA-Arg [KO:K14219]
USDA257_c54670  trnR4; tRNA-Arg [KO:K14219]
USDA257_c37590  trnN; tRNA-Asn [KO:K14220]
USDA257_c32980  trnD1; tRNA-Asp [KO:K14221]
USDA257_c32990  trnD2; tRNA-Asp [KO:K14221]
USDA257_c37600  trnC; tRNA-Cys [KO:K14222]
USDA257_c04690  trnQ1; tRNA-Gln [KO:K14223]
USDA257_c06640  trnQ2; tRNA-Gln [KO:K14223]
USDA257_c35980  trnE1; tRNA-Glu [KO:K14224]
USDA257_c36150  trnE3; tRNA-Glu [KO:K14224]
USDA257_c36110  trnE2; tRNA-Glu [KO:K14224]
USDA257_c36160  trnE4; tRNA-Glu [KO:K14224]
USDA257_c33730  trnG2; tRNA-Gly [KO:K14225]
USDA257_c01380  trnG1; tRNA-Gly [KO:K14225]
USDA257_c56970  trnG3; tRNA-Gly [KO:K14225]
USDA257_c03760  trnH; tRNA-His [KO:K14226]
USDA257_c50170  trnI1; tRNA-Ile [KO:K14227]
USDA257_c54540  trnI2; tRNA-Ile [KO:K14227]
USDA257_c59360  trnI3; tRNA-Ile [KO:K14227]
USDA257_c61020  trnL5; tRNA-Leu [KO:K14228]
USDA257_c34310  trnL1; tRNA-Leu [KO:K14228]
USDA257_c35860  trnL2; tRNA-Leu [KO:K14228]
USDA257_c37020  trnL3; tRNA-Leu [KO:K14228]
USDA257_c50430  trnL4; tRNA-Leu [KO:K14228]
USDA257_c36630  trnK1; tRNA-Lys [KO:K14229]
USDA257_c43470  trnK2; tRNA-Lys [KO:K14229]
USDA257_c51730  trnM3; tRNA-Met [KO:K14230]
USDA257_c50130  trnM2; tRNA-Met [KO:K14230]
USDA257_c59400  trnM5; tRNA-Met [KO:K14230]
USDA257_c54500  trnM4; tRNA-Met [KO:K14230]
USDA257_c46330  trnM1; tRNA-Met [KO:K14230]
USDA257_c02160  trnF; tRNA-Phe [KO:K14231]
USDA257_c06670  trnP1; tRNA-Pro [KO:K14232]
USDA257_c32610  trnP2; tRNA-Pro [KO:K14232]
USDA257_c36200  trnP3; tRNA-Pro [KO:K14232]
USDA257_c60410  trnS4; tRNA-Ser [KO:K14233]
USDA257_c40440  trnS2; tRNA-Ser [KO:K14233]
USDA257_c07870  trnS1; tRNA-Ser [KO:K14233]
USDA257_c56740  trnS3; tRNA-Ser [KO:K14233]
USDA257_c01200  trnT1; tRNA-Thr [KO:K14234]
USDA257_c02070  trnT2; tRNA-Thr [KO:K14234]
USDA257_c33680  trnT3; tRNA-Thr [KO:K14234]
USDA257_c33760  trnW; tRNA-Trp [KO:K14235]
USDA257_c33720  trnY; tRNA-Tyr [KO:K14236]
USDA257_c32970  trnV1; tRNA-Val [KO:K14237]
USDA257_c52900  trnV2; tRNA-Val [KO:K14237]
USDA257_c53750  gltX; glutamate--tRNA ligase GltX [KO:K01885] [EC:6.1.1.17]
USDA257_c60330  putative glutamyl-tRNA amidotransferase subunit A protein [KO:K02433] [EC:6.3.5.7 6.3.5.6]
USDA257_c56070  gatA3; glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.7 6.3.5.6]
USDA257_c33480  gatA2; glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.7 6.3.5.6]
USDA257_c33510  gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [KO:K02434] [EC:6.3.5.7 6.3.5.6]
USDA257_c33470  gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [KO:K02435] [EC:6.3.5.7 6.3.5.6]
USDA257_c40720  alaS; alanine--tRNA ligase AlaS [KO:K01872] [EC:6.1.1.7]
USDA257_c09140  aspS; aspartate--tRNA ligase AspS [KO:K01876] [EC:6.1.1.12]
USDA257_c05610  glyQ; glycine--tRNA ligase alpha subunit GlyQ [KO:K01878] [EC:6.1.1.14]
USDA257_c05650  glyS; glycine--tRNA ligase beta subunit GlyS [KO:K01879] [EC:6.1.1.14]
USDA257_c34600  thrS; threonine--tRNA ligase ThrS [KO:K01868] [EC:6.1.1.3]
USDA257_c35710  serS; serine--tRNA ligase SerS [KO:K01875] [EC:6.1.1.11]
USDA257_c08350  cysS; cysteine--tRNA ligase CysS [KO:K01883] [EC:6.1.1.16]
USDA257_c40380  metG; methionine--tRNA ligase MetG [KO:K01874] [EC:6.1.1.10]
USDA257_c00580  fmt1; methionyl-tRNA formyltransferase Fmt [KO:K00604] [EC:2.1.2.9]
USDA257_c32210  fmt2; methionyl-tRNA formyltransferase Fmt [KO:K00604] [EC:2.1.2.9]
USDA257_c35550  valS; valine--tRNA ligase ValS [KO:K01873] [EC:6.1.1.9]
USDA257_c58490  leuS; leucine--tRNA ligase LeuS [KO:K01869] [EC:6.1.1.4]
USDA257_c05130  ileS; isoleucine--tRNA ligase IleS [KO:K01870] [EC:6.1.1.5]
USDA257_c53760  lysS; lysine--tRNA ligase LysS [KO:K04567] [EC:6.1.1.6]
USDA257_c35620  argS; arginine--tRNA ligase ArgS [KO:K01887] [EC:6.1.1.19]
USDA257_c33170  proS; proline--tRNA ligase ProS [KO:K01881] [EC:6.1.1.15]
USDA257_c05010  hisS; histidine--tRNA ligase HisS [KO:K01892] [EC:6.1.1.21]
USDA257_c61340  pheS; phenylalanine--tRNA ligase alpha chain [KO:K01889] [EC:6.1.1.20]
USDA257_c61350  pheT; phenylalanine--tRNA ligase beta chain [KO:K01890] [EC:6.1.1.20]
USDA257_c37960  tyrS; tyrosine--tRNA ligase TyrS [KO:K01866] [EC:6.1.1.1]
USDA257_c00350  trpS; tryptophan--tRNA ligase TrpS [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
KO pathway
ko00970   

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