KEGG   PATHWAY: shm00630Help
Entry
shm00630                    Pathway                                

Name
Glyoxylate and dicarboxylate metabolism - Shewanella sp. MR-7
Class
Metabolism; Carbohydrate metabolism
BRITE hierarchy
Pathway map
shm00630  Glyoxylate and dicarboxylate metabolism
shm00630

Ortholog table
Module
shm_M00012  Glyoxylate cycle [PATH:shm00630]
Organism
Shewanella sp. MR-7 [GN:shm]
Gene
Shewmr7_2844  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Shewmr7_2845  malate synthase A [KO:K01638] [EC:2.3.3.9]
Shewmr7_3945  malate synthase [KO:K01638] [EC:2.3.3.9]
Shewmr7_0614  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Shewmr7_1705  citrate synthase [KO:K01647] [EC:2.3.3.1]
Shewmr7_3592  aconitase [KO:K01682] [EC:4.2.1.99 4.2.1.3]
Shewmr7_2664  acetyl-CoA acetyltransferases [KO:K00626] [EC:2.3.1.9]
Shewmr7_0945  Catalase [KO:K03781] [EC:1.11.1.6]
Shewmr7_2585  Catalase domain protein [KO:K03781] [EC:1.11.1.6]
Shewmr7_0254  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Shewmr7_2473  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Shewmr7_3660  alanine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.51 2.6.1.45 2.6.1.44]
Shewmr7_3001  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Shewmr7_3719  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Shewmr7_1160  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Shewmr7_0624  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Shewmr7_0622  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Shewmr7_3597  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Shewmr7_0623  glycine cleavage system H protein [KO:K02437]
Shewmr7_2461  6-phosphogluconate dehydrogenase, NAD-binding protein [KO:K00042] [EC:1.1.1.60]
Shewmr7_2587  glycerate kinase [KO:K00865] [EC:2.7.1.165]
Shewmr7_3107  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00018] [EC:1.1.1.29]
Shewmr7_1932  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.3.42 4.1.2.14]
Shewmr7_0097  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
Shewmr7_3198  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Shewmr7_0096  Twin-arginine translocation pathway signal [KO:K00123] [EC:1.17.1.9]
Shewmr7_3791  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
Shewmr7_3795  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
Shewmr7_0098  formate dehydrogenase beta subunit [KO:K00124]
Shewmr7_3792  4Fe-4S ferredoxin, iron-sulfur binding domain protein [KO:K00124]
Shewmr7_3796  4Fe-4S ferredoxin, iron-sulfur binding domain protein [KO:K00124]
Shewmr7_0099  formate dehydrogenase gamma subunit [KO:K00127]
Shewmr7_3793  formate dehydrogenase gamma subunit [KO:K00127]
Shewmr7_3797  formate dehydrogenase gamma subunit [KO:K00127]
Shewmr7_0283  formate dehydrogenase gamma subunit [KO:K00127]
Shewmr7_2714  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
Reference
PMID:10978349 (EC5.3.1.22)
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta -hydroxyacid dehydrogenases in Escherichia coli and Haemophilusinfluenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
KO pathway
ko00630   

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