KEGG   PATHWAY: sjp00020
Entry
sjp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingobium indicum UT26S
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sjp00020  Citrate cycle (TCA cycle)
sjp00020

Module
sjp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sjp00020]
sjp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sjp00020]
sjp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sjp00020]
sjp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sjp00020]
sjp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sjp00020]
Other DBs
GO: 0006099
Organism
Sphingobium indicum UT26S [GN:sjp]
Gene
SJA_C1-08950  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
SJA_C1-23180  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SJA_C1-24210  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SJA_C1-24320  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SJA_C1-24310  sucB; 2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
SJA_C1-20620  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SJA_C1-24290  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SJA_C1-24330  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
SJA_C1-11590  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SJA_C1-05830  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
SJA_C1-10730  sdhA; succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SJA_C1-24370  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SJA_C1-10710  sdhC; succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
SJA_C1-10720  sdhD; succinate dehydrogenase hydrophobic anchor subunit [KO:K00242]
SJA_C1-32190  fumA; fumarate hydratase FumA/FumB [KO:K01676] [EC:4.2.1.2]
SJA_C1-15580  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SJA_C1-24340  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SJA_C1-10820  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SJA_C1-14490  pdhA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
SJA_C1-14500  pdhB; pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
SJA_C1-20640  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sjp00010  Glycolysis / Gluconeogenesis
sjp00053  Ascorbate and aldarate metabolism
sjp00061  Fatty acid biosynthesis
sjp00071  Fatty acid degradation
sjp00190  Oxidative phosphorylation
sjp00220  Arginine biosynthesis
sjp00250  Alanine, aspartate and glutamate metabolism
sjp00280  Valine, leucine and isoleucine degradation
sjp00350  Tyrosine metabolism
sjp00470  D-Amino acid metabolism
sjp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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