KEGG   PATHWAY: ssj00240Help
Entry
ssj00240                    Pathway                                

Name
Pyrimidine metabolism - Shigella sonnei 53G
Class
Metabolism; Nucleotide metabolism
BRITE hierarchy
Pathway map
Pyrimidine metabolism
ssj00240

All organismsOrtholog table
Module
Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP [PATH:ssj00240]
Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ssj00240]
Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP [PATH:ssj00240]
Other DBs
BSID: 
GO: 
Organism
Shigella sonnei 53G [GN:ssj]
Gene
carB; carbamoyl phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] [KO:K01956] [EC:6.3.5.5]
pyrB; aspartate carbamoyltransferase catalytic subunit [KO:K00609] [EC:2.1.3.2]
aspartate carbamoyltransferase regulatory subunit; K00610 aspartate carbamoyltransferase regulatory subunit [KO:K00610]
dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3] [KO:K01465] [EC:3.5.2.3]
dihydroorotate dehydrogenase 2; K00254 dihydroorotate dehydrogenase [EC:1.3.5.2] [KO:K00254] [EC:1.3.5.2]
pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] [KO:K01591] [EC:4.1.1.23]
cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.14]
pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
ndk; mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase [KO:K00940] [EC:2.7.4.6]
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] [KO:K00962] [EC:2.7.7.8]
pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] [KO:K03040] [EC:2.7.7.6]
rpoB; DNA-directed RNA polymerase subunit beta [KO:K03043] [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] [KO:K03046] [EC:2.7.7.6]
rpoZ; DNA-directed RNA polymerase subunit omega [KO:K03060] [EC:2.7.7.6]
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] [KO:K02335] [EC:2.7.7.7]
dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] [KO:K02338] [EC:2.7.7.7]
DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] [KO:K02343] [EC:2.7.7.7]
holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] [KO:K02341] [EC:2.7.7.7]
DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] [KO:K02342] [EC:2.7.7.7]
DNA polymerase III subunit theta; K02345 DNA polymerase III subunit theta [EC:2.7.7.7] [KO:K02345] [EC:2.7.7.7]
DNA polymerase III subunit chi; K02339 DNA polymerase III subunit chi [EC:2.7.7.7] [KO:K02339] [EC:2.7.7.7]
DNA polymerase III subunit psi; K02344 DNA polymerase III subunit psi [EC:2.7.7.7] [KO:K02344] [EC:2.7.7.7]
dcd; deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
uridine/cytidine kinase; K00876 uridine kinase [EC:2.7.1.48] [KO:K00876] [EC:2.7.1.48]
ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic [KO:K11751] [EC:3.6.1.45 3.1.3.5]
ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic [KO:K11751] [EC:3.6.1.45 3.1.3.5]
surE; 5'(3')-nucleotidase/polyphosphatase [KO:K03787] [EC:3.1.3.5]
dUMP phosphatase; K08723 5'-nucleotidase [EC:3.1.3.5] [KO:K08723] [EC:3.1.3.5]
uridine phosphorylase; K00757 uridine phosphorylase [EC:2.4.2.3] [KO:K00757] [EC:2.4.2.3]
upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
dihydropyrimidine dehydrogenase subunit A; K17722 dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] [KO:K17722] [EC:1.3.1.1]
dihydropyrimidine dehydrogenase subunit A; K17722 dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] [KO:K17722] [EC:1.3.1.1]
dihydropyrimidine dehydrogenase subunit B; K17723 dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] [KO:K17723] [EC:1.3.1.1]
phenylhydantoinase; K01464 dihydropyrimidinase [EC:3.5.2.2] [KO:K01464] [EC:3.5.2.2]
monooxygenase of the alternative pyrimidine degradation pathway; K09018 pyrimidine oxygenase [EC:1.14.99.46] [KO:K09018] [EC:1.14.99.46]
monooxygenase; K09018 pyrimidine oxygenase [EC:1.14.99.46] [KO:K09018] [EC:1.14.99.46]
flavin:NADH oxidoreductase subunit of alternative pyrimidine degradation pathway; K09024 flavin reductase [EC:1.5.1.-] [KO:K09024] [EC:1.5.1.-]
hypothetical protein; K09020 ureidoacrylate peracid hydrolase [EC:3.5.1.110] [KO:K09020] [EC:3.5.1.110]
hypothetical protein; K09021 aminoacrylate peracid reductase [KO:K09021]
hypothetical protein; K09021 aminoacrylate peracid reductase [KO:K09021]
enzyme of the alternative pyrimidine degradation pathway; K09023 aminoacrylate hydrolase [EC:3.5.1.-] [KO:K09023] [EC:3.5.1.-]
malonic semialdehyde reductase; K16066 malonic semialdehyde reductase [EC:1.1.1.-] [KO:K16066] [EC:1.1.1.-]
malonic semialdehyde reductase; K09019 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-] [KO:K09019] [EC:1.1.1.-]
rihB; ribonucleoside hydrolase 2 [KO:K10213] [EC:3.2.2.8]
mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.8]
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
anaerobic ribonucleoside triphosphate reductase; K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2] [KO:K00527] [EC:1.17.4.2]
ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] [KO:K00525] [EC:1.17.4.1]
ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] [KO:K00525] [EC:1.17.4.1]
nrdF; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
cytidine deaminase; K01489 cytidine deaminase [EC:3.5.4.5] [KO:K01489] [EC:3.5.4.5]
deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
deoD; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
thymidine kinase; K00857 thymidine kinase [EC:2.7.1.21] [KO:K00857] [EC:2.7.1.21]
tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
cpdB; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein [KO:K01119] [EC:3.1.3.6 3.1.4.16]
pseudouridine kinase; K16328 pseudouridine kinase [EC:2.7.1.83] [KO:K16328] [EC:2.7.1.83]
putative kinase; K16328 pseudouridine kinase [EC:2.7.1.83] [KO:K16328] [EC:2.7.1.83]
hypothetical protein; K16329 pseudouridine-5'-phosphate glycosidase [EC:3.2.-.-] [KO:K16329] [EC:3.2.-.-]
Compound
C00015  
UDP
C00029  
UDP-glucose
C00039  
DNA
C00046  
RNA
C00055  
CMP
C00063  
CTP
C00064  
L-Glutamine
C00075  
UTP
C00086  
Urea
C00099  
beta-Alanine
C00105  
UMP
C00106  
Uracil
C00112  
CDP
C00119  
5-Phospho-alpha-D-ribose 1-diphosphate
C00169  
Carbamoyl phosphate
C00178  
Thymine
C00214  
Thymidine
C00222  
3-Oxopropanoate
C00239  
dCMP
C00295  
Orotate
C00299  
Uridine
C00337  
(S)-Dihydroorotate
C00342  
Thioredoxin
C00343  
Thioredoxin disulfide
C00363  
dTDP
C00364  
dTMP
C00365  
dUMP
C00380  
Cytosine
C00383  
Malonate
C00429  
5,6-Dihydrouracil
C00438  
N-Carbamoyl-L-aspartate
C00458  
dCTP
C00459  
dTTP
C00460  
dUTP
C00475  
Cytidine
C00526  
Deoxyuridine
C00672  
2-Deoxy-D-ribose 1-phosphate
C00705  
dCDP
C00813  
Barbiturate
C00881  
Deoxycytidine
C00906  
5,6-Dihydrothymine
C01013  
3-Hydroxypropanoate
C01103  
Orotidine 5'-phosphate
C01168  
Pseudouridine 5'-phosphate
C01346  
dUDP
C01368  
3'-UMP
C01563  
Carbamate
C02067  
Pseudouridine
C02170  
Methylmalonate
C02354  
2',3'-Cyclic CMP
C02355  
2',3'-Cyclic UMP
C02376  
5-Methylcytosine
C02642  
3-Ureidopropionate
C03997  
5-Hydroxymethyldeoxycytidylate
C05100  
3-Ureidoisobutyrate
C05145  
3-Aminoisobutyric acid
C05281  
5-Methylbarbiturate
C05822  
3'-CMP
C06198  
P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  
2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  
2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  
3-Oxo-3-ureidopropanoate
C20231  
(Z)-3-Ureidoacrylate peracid
C20249  
(Z)-3-Peroxyaminoacrylate
C20253  
Aminoacrylate
C20254  
Ureidoacrylate
KO pathway
 

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