KEGG   PATHWAY: syn00624Help
Entry
syn00624                    Pathway                                

Name
Polycyclic aromatic hydrocarbon degradation - Synechocystis sp. PCC 6803
Class
Metabolism; Xenobiotics biodegradation and metabolism
BRITE hierarchy
Pathway map
Polycyclic aromatic hydrocarbon degradation
syn00624

All organismsOrtholog table
Other DBs
BSID: 
UMBBD: 
Organism
Synechocystis sp. PCC 6803 [GN:syn]
Gene
cbaB; 3-chlorobenzoate-3,4-dioxygenase [KO:K00517] [EC:1.14.-.-]
cyp; cytochrome P450 [KO:K00517] [EC:1.14.-.-]
O-methyltransferase; K00599 [EC:2.1.1.-] [KO:K00599] [EC:2.1.1.-]
rapQ; methyltransferase [KO:K00599] [EC:2.1.1.-]
Compound
C00090  
Catechol
C00230  
3,4-Dihydroxybenzoate
C00587  
3-Hydroxybenzoate
C00805  
Salicylate
C01163  
3-Carboxy-cis,cis-muconate
C01198  
3-(2-Hydroxyphenyl)propanoate
C01504  
Indanone
C01606  
Phthalate
C02274  
Dihydrocoumarin
C03012  
Naphthalene-1,2-diol
C03057  
2-Carboxybenzaldehyde
C03164  
Phenanthrene-3,4-diol
C03203  
1-Hydroxy-2-naphthoate
C03223  
3,4-Dihydroxyphthalate
C03233  
4,5-Dihydroxyphthalate
C04468  
(+)-cis-3,4-Dihydrophenanthrene-3,4-diol
C04484  
4-Carboxy-2-hydroxymuconate semialdehyde
C04783  
cis-4,5-Dihydroxycyclohexa-1(6),2-diene-1,2-dicarboxylate
C06318  
(3S,4R)-3,4-Dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate
C06337  
Terephthalate
C06680  
4-Hydroxyphthalate
C06711  
Fluoren-9-ol
C06712  
Fluoren-9-one
C07535  
Benzo[a]pyrene
C07715  
Fluorene
C07717  
3,4-Dihydroxyfluorene
C07718  
2-Hydroxy-4-(1-oxo-1,3-dihydro-2H-inden-2-ylidene)-but-2-enoic acid
C07719  
2-Formyl-1-indanone
C07720  
3-Hydroxy-1-indanone
C07721  
(+)-(3S,4R)-cis-3,4-Dihydroxy-3,4-dihydrofluorene
C07722  
3,4-Dihydroxy-3,4-dihydro-9-fluorenone
C07723  
4-Hydroxy-9-fluorenone
C07724  
1,2-Dihydroxyfluorene
C07725  
2-Hydroxy-4-(2-oxo-1,3-dihydro-2H-inden-1-ylidene)but-2-enoic acid
C07726  
1-Formyl-2-indanone
C07727  
2-Indanone
C07728  
3-Isochromanone
C11422  
Phenanthrene
C11425  
2-Hydroxy-2H-benzo[h]chromene-2-carboxylate
C11426  
cis-4-(1'-Hydroxynaphth-2'-yl)-2-oxobut-3-enoate
C11427  
1-Hydroxy-2-naphthaldehyde
C11428  
trans-9(S),10(S)-Dihydrodiolphenanthrene
C11429  
Phenanthrene-9,10-oxide
C11430  
9-Hydroxyphenanthrene
C11431  
Phenanthrene-1,2-oxide
C11432  
1-Phenanthrol
C11433  
1-Methoxyphenanthrene
C14315  
Anthracene
C14335  
Pyrene
C14519  
1-Hydroxypyrene
C16149  
(3Z)-4-(2-Carboxyphenyl)-2-oxobut-3-enoate
C16203  
Anthracene-cis-1,2-dihydrodiol
C16204  
1,2-Anthracenediol
C16205  
Anthracene-9,10-dihydrodiol
C16206  
9,10-Dihydroxyanthracene
C16207  
Anthraquinone
C16208  
1-Methoxy-2-hydroxyanthracene
C16209  
3-(2-Carboxyvinyl)naphthalene-2-carboxylic acid
C16210  
4-(3-Hydroxy-2-naphthyl)-2-oxobut-3-enoic acid
C16211  
6,7-Benzocoumarin
C16212  
3-Hydroxy-2-naphthoate
C16213  
2,3-Dihydroxynaphthalene
C16214  
3-[6-(Carboxymethylene)cyclohexa-2,4-dien-1-ylidene]-2-oxopropanate
C16215  
1,2-Dihydrophthalic acid
C16262  
1-Hydro-1,1a-dihydroxy-9-fluorenone
C16263  
2,3-Dihydroxy-2'-carboxybiphenyl
C16264  
2-Hydroxy-6-oxo-6-(2-carboxyphenyl)-hexa-2,4-dienoate
C18249  
cis-4,5-Dihydroxy-4,5-dihydropyrene
C18250  
4,5-Dihydroxypyrene
C18251  
Pyrene-4,5-dione
C18252  
Phenanthrene-4,5-dicarboxylate
C18253  
Phenanthrene-4-carboxylate
C18254  
Pyrene-4,5-oxide
C18255  
trans-4,5-Dihydroxy-4,5-dihydropyrene
C18256  
cis-3,4-Phenanthrenedihydrodiol-4-carboxylate
C18257  
Pyrene-1,6-dione
C18258  
Pyrene-1,8-dione
C18259  
1-Methoxypyrene
C18260  
1,6-Dimethoxypyrene
C18261  
1-Hydroxy-6-methoxypyrene
C18262  
1-Methoxypyrene-6,7-oxide
C18263  
1,6-Dihydroxypyrene
C18264  
1,8-Dihydroxypyrene
C18265  
1-Hydroxypyrene-6,7-oxide
C18266  
1-Hydroxypyrene-7,8-oxide
C18267  
Pyrene-1,2-oxide
C18269  
1-Pyrenylsulfate
C18270  
Benzo[a]pyrene-cis-4,5-dihydrodiol
C18271  
cis-4-(7-Hydroxtpyren-8-yl)-2-oxobut-3-enoate
C18272  
cis-4-(8-Hydroxypyren-7-yl)-2-oxobut-3-enoate
C18273  
7,8-Dihydropyrene-8-carboxylate
C18274  
7,8-Dihydropyrene-7-carboxylate
C18275  
Benzo[a]pyrene-cis-7,8-dihydrodiol
C18276  
Benzo[a]pyrene-cis-9,10-dihydrodiol
C18277  
4,5-Chrysenedicarboxylate
C18278  
9,10-Dihydroxybenzo[a]pyrene
C18279  
4,5-Dihydroxybenzo[a]pyrene
C18280  
11,12-Dihydroxybenzo[a]pyrene
C18281  
10-Oxabenzo[def]chrysen-9-one
C18282  
5-Chrysenecarboxylate
C18283  
4-Chrysenecarboxylate
C18284  
Benzo[a]pyrene-cis-11,12-dihydrodiol
C18285  
Benzo[a]pyrene-trans-11,12-dihydrodiol
C18286  
Benzo[a]pyrene-11,12-epoxide
C18314  
Phthalate 3,4-cis-dihydrodiol
Reference
  Authors
Wattiau P, Bastiaens L, van Herwijnen R, Daal L, Parsons JR, Renard ME, Springael D, Cornelis GR.
  Title
Fluorene degradation by Sphingomonas sp. LB126 proceeds through protocatechuic acid: a genetic analysis.
  Journal
Res Microbiol 152:861-72 (2001)
Reference
  Authors
Story SP, Kline EL, Hughes TA, Riley MB, Hayasaka SS.
  Title
Degradation of aromatic hydrocarbons by Sphingomonas paucimobilis strain EPA505.
  Journal
Arch Environ Contam Toxicol 47:168-76 (2004)
Reference
  Authors
Habe H, Chung JS, Kato H, Ayabe Y, Kasuga K, Yoshida T, Nojiri H, Yamane H, Omori T.
  Title
Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63.
  Journal
J Bacteriol 186:5938-44 (2004)
Reference
  Authors
Nojiri H, Habe H, Omori T.
  Title
Bacterial degradation of aromatic compounds via angular dioxygenation.
  Journal
J Gen Appl Microbiol 47:279-305 (2001)
Reference
  Authors
Pagnout C, Frache G, Poupin P, Maunit B, Muller JF, Ferard JF.
  Title
Isolation and characterization of a gene cluster involved in PAH degradation in Mycobacterium sp. strain SNP11: expression in Mycobacterium smegmatis mc(2)155.
  Journal
Res Microbiol 158:175-86 (2007)
Reference
  Authors
Dean-Ross D, Moody JD, Freeman JP, Doerge DR, Cerniglia CE.
  Title
Metabolism of anthracene by a Rhodococcus species.
  Journal
FEMS Microbiol Lett 204:205-11 (2001)
Reference
  Authors
Moody JD, Freeman JP, Doerge DR, Cerniglia CE.
  Title
Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1.
  Journal
Appl Environ Microbiol 67:1476-83 (2001)
Reference
  Authors
van Herwijnen R, Springael D, Slot P, Govers HA, Parsons JR.
  Title
Degradation of anthracene by Mycobacterium sp. strain LB501T proceeds via a novel pathway, through o-phthalic acid.
  Journal
Appl Environ Microbiol 69:186-90 (2003)
Reference
  Authors
Haritash AK, Kaushik CP
  Title
Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review.
  Journal
J Hazard Mater 169:1-15 (2009)
Reference
  Authors
Liang Y, Gardner DR, Miller CD, Chen D, Anderson AJ, Weimer BC, Sims RC
  Title
Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS.
  Journal
Appl Environ Microbiol 72:7821-8 (2006)
Reference
  Authors
da Silva M, Esposito E, Moody JD, Canhos VP, Cerniglia CE
  Title
Metabolism of aromatic hydrocarbons by the filamentous fungus Cyclothyrium sp.
  Journal
Chemosphere 57:943-52 (2004)
Reference
  Authors
Kim SJ, Kweon O, Jones RC, Freeman JP, Edmondson RD, Cerniglia CE
  Title
Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology.
  Journal
J Bacteriol 189:464-72 (2007)
Reference
PMID:9094229
  Authors
Wunder T, Marr J, Kremer S, Sterner O, Anke H
  Title
1-Methoxypyrene and 1,6-dimethoxypyrene: two novel metabolites in fungal metabolism of polycyclic aromatic hydrocarbons.
  Journal
Arch Microbiol 167:310-6 (1997)
Reference
PMID:8572690
  Authors
Schneider J, Grosser R, Jayasimhulu K, Xue W, Warshawsky D
  Title
Degradation of pyrene, benz[a]anthracene, and benzo[a]pyrene by Mycobacterium sp. strain RJGII-135, isolated from a former coal gasification site.
  Journal
Appl Environ Microbiol 62:13-9 (1996)
Reference
  Authors
Moody JD, Freeman JP, Fu PP, Cerniglia CE
  Title
Degradation of benzo[a]pyrene by Mycobacterium vanbaalenii PYR-1.
  Journal
Appl Environ Microbiol 70:340-5 (2004)
Reference
  Authors
Eaton RW
  Title
Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B.
  Journal
J Bacteriol 183:3689-703 (2001)
KO pathway
 

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