KEGG   PATHWAY: the00020
Entry
the00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermococcus sp. 4557
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
the00020  Citrate cycle (TCA cycle)
the00020

Module
the_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:the00020]
the_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:the00020]
Other DBs
GO: 0006099
Organism
Thermococcus sp. 4557 [GN:the]
Gene
GQS_02125  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GQS_02140  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GQS_02130  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GQS_02145  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GQS_02135  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
GQS_02150  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
GQS_02120  2-oxoacid: ferredoxin oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
GQS_08195  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
GQS_08200  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
GQS_00525  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
GQS_03810  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
GQS_08115  porA; pyruvate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
GQS_08110  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
GQS_08140  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00189] [EC:1.2.7.7 1.2.7.1]
GQS_08120  porD; pyuvate ferredoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
the00010  Glycolysis / Gluconeogenesis
the00061  Fatty acid biosynthesis
the00071  Fatty acid degradation
the00190  Oxidative phosphorylation
the00220  Arginine biosynthesis
the00250  Alanine, aspartate and glutamate metabolism
the00280  Valine, leucine and isoleucine degradation
the00350  Tyrosine metabolism
the00470  D-Amino acid metabolism
the00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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