KEGG   PATHWAY: trs00020
Entry
trs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Terriglobus roseus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
trs00020  Citrate cycle (TCA cycle)
trs00020

Module
trs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:trs00020]
trs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:trs00020]
Other DBs
GO: 0006099
Organism
Terriglobus roseus [GN:trs]
Gene
Terro_3552  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Terro_4094  aconitase A [KO:K01681] [EC:4.2.1.3]
Terro_0475  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Terro_3844  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Terro_0155  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Terro_0792  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Terro_0793  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Terro_1073  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Terro_1072  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Terro_1074  succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
Terro_2728  hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01676] [EC:4.2.1.2]
Terro_2644  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
Terro_2280  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
Terro_4338  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Terro_1461  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Terro_0151  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
trs00010  Glycolysis / Gluconeogenesis
trs00053  Ascorbate and aldarate metabolism
trs00061  Fatty acid biosynthesis
trs00071  Fatty acid degradation
trs00190  Oxidative phosphorylation
trs00220  Arginine biosynthesis
trs00250  Alanine, aspartate and glutamate metabolism
trs00280  Valine, leucine and isoleucine degradation
trs00350  Tyrosine metabolism
trs00470  D-Amino acid metabolism
trs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system