KEGG   PATHWAY: txy00020
Entry
txy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermoanaerobacterium xylanolyticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
txy00020  Citrate cycle (TCA cycle)
txy00020

Module
txy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:txy00020]
Other DBs
GO: 0006099
Organism
Thermoanaerobacterium xylanolyticum [GN:txy]
Gene
Thexy_1925  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Thexy_1944  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Thexy_0469  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Thexy_0914  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Thexy_0388  3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Thexy_1617  2-oxoglutarate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Thexy_1631  3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Thexy_2267  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Thexy_0389  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Thexy_1616  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Thexy_1630  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Thexy_2268  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Thexy_0390  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Thexy_1615  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Thexy_1629  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Thexy_0387  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00176] [EC:1.2.7.3]
Thexy_1618  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00176] [EC:1.2.7.3]
Thexy_1632  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00176] [EC:1.2.7.3]
Thexy_0066  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Thexy_0067  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Thexy_0847  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Thexy_0241  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Thexy_1943  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
txy00010  Glycolysis / Gluconeogenesis
txy00053  Ascorbate and aldarate metabolism
txy00061  Fatty acid biosynthesis
txy00071  Fatty acid degradation
txy00190  Oxidative phosphorylation
txy00220  Arginine biosynthesis
txy00250  Alanine, aspartate and glutamate metabolism
txy00280  Valine, leucine and isoleucine degradation
txy00350  Tyrosine metabolism
txy00470  D-Amino acid metabolism
txy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system