KEGG   PATHWAY: vce00020
Entry
vce00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio cholerae O1 2010EL-1786
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vce00020  Citrate cycle (TCA cycle)
vce00020

Module
vce_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vce00020]
vce_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vce00020]
vce_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vce00020]
vce_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vce00020]
vce_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vce00020]
Other DBs
GO: 0006099
Organism
Vibrio cholerae O1 2010EL-1786 [GN:vce]
Gene
Vch1786_I1585  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
Vch1786_I0012  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Vch1786_I0645  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Vch1786_I1580  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Vch1786_I1579  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Vch1786_I1902  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Vch1786_I2133  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Vch1786_I1577  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Vch1786_I1578  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
Vch1786_I1582  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Vch1786_I1581  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Vch1786_I1584  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
Vch1786_I1583  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Vch1786_I2149  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Vch1786_I2150  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
Vch1786_I2151  frdC; fumarate reductase subunit C [KO:K00246]
Vch1786_I2152  frdD; fumarate reductase subunit D [KO:K00247]
Vch1786_I0806  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
Vch1786_I1070  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Vch1786_I2741  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Vch1786_I2232  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Vch1786_I1904  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
Vch1786_I1903  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Vch1786_II0219  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vce00010  Glycolysis / Gluconeogenesis
vce00053  Ascorbate and aldarate metabolism
vce00061  Fatty acid biosynthesis
vce00071  Fatty acid degradation
vce00190  Oxidative phosphorylation
vce00220  Arginine biosynthesis
vce00250  Alanine, aspartate and glutamate metabolism
vce00280  Valine, leucine and isoleucine degradation
vce00350  Tyrosine metabolism
vce00470  D-Amino acid metabolism
vce00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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