KEGG   PATHWAY: vcm00240Help
Entry
vcm00240                    Pathway                                

Name
Pyrimidine metabolism - Vibrio cholerae M66-2
Class
Metabolism; Nucleotide metabolism
BRITE hierarchy
Pathway map
Pyrimidine metabolism
vcm00240

All organismsOrtholog table
Module
Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP [PATH:vcm00240]
Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:vcm00240]
Other DBs
BSID: 
GO: 
Organism
Vibrio cholerae M66-2 [GN:vcm]
Gene
carB; carbamoyl phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
carA; carbamoyl phosphate synthase small subunit [KO:K01956] [EC:6.3.5.5]
pyrB; aspartate carbamoyltransferase catalytic subunit [KO:K00609] [EC:2.1.3.2]
pyrI; aspartate carbamoyltransferase regulatory subunit [KO:K00610]
pyrC; dihydroorotase [KO:K01465] [EC:3.5.2.3]
pyrD; dihydroorotate dehydrogenase 2 [KO:K00254] [EC:1.3.5.2]
pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.14]
pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
pnp; polynucleotide phosphorylase/polyadenylase [KO:K00962] [EC:2.7.7.8]
putative deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] [KO:K02428] [EC:3.6.1.19]
pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
rpoA; DNA-directed RNA polymerase subunit alpha [KO:K03040] [EC:2.7.7.6]
rpoB; DNA-directed RNA polymerase subunit beta [KO:K03043] [EC:2.7.7.6]
rpoC; DNA-directed RNA polymerase subunit beta' [KO:K03046] [EC:2.7.7.6]
rpoZ; DNA-directed RNA polymerase subunit omega [KO:K03060] [EC:2.7.7.6]
polI; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
dnaZX; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] [KO:K02342] [EC:2.7.7.7]
DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] [KO:K02342] [EC:2.7.7.7]
dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
holC; DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
holD; DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
udk; uridine kinase [KO:K00876] [EC:2.7.1.48]
5'-nucleotidase; K01081 5'-nucleotidase [EC:3.1.3.5] [KO:K01081] [EC:3.1.3.5]
ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.6.1.45 3.1.3.5]
surE; stationary phase survival protein SurE [KO:K03787] [EC:3.1.3.5]
hypothetical protein; K08722 5'-nucleotidase [EC:3.1.3.5] [KO:K08722] [EC:3.1.3.5]
udp-2; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
udp-1; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.8]
trxB; thioredoxin reductase [KO:K00384] [EC:1.8.1.9]
nrdD; anaerobic ribonucleoside triphosphate reductase [KO:K00527] [EC:1.17.4.2]
nrdA; ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
deoD-2; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
deoD; purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
deoxycytidylate deaminase; K01493 dCMP deaminase [EC:3.5.4.12] [KO:K01493] [EC:3.5.4.12]
tdk; thymidine kinase [KO:K00857] [EC:2.7.1.21]
tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
cpdB; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein [KO:K01119] [EC:3.1.4.16]
putative 2; K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] [KO:K01119] [EC:3.1.4.16]
Compound
C00015  
UDP
C00029  
UDP-glucose
C00039  
DNA
C00046  
RNA
C00055  
CMP
C00063  
CTP
C00064  
L-Glutamine
C00075  
UTP
C00086  
Urea
C00099  
beta-Alanine
C00105  
UMP
C00106  
Uracil
C00112  
CDP
C00119  
5-Phospho-alpha-D-ribose 1-diphosphate
C00169  
Carbamoyl phosphate
C00178  
Thymine
C00214  
Thymidine
C00222  
3-Oxopropanoate
C00239  
dCMP
C00295  
Orotate
C00299  
Uridine
C00337  
(S)-Dihydroorotate
C00342  
Thioredoxin
C00343  
Thioredoxin disulfide
C00363  
dTDP
C00364  
dTMP
C00365  
dUMP
C00380  
Cytosine
C00383  
Malonate
C00429  
5,6-Dihydrouracil
C00438  
N-Carbamoyl-L-aspartate
C00458  
dCTP
C00459  
dTTP
C00460  
dUTP
C00475  
Cytidine
C00526  
Deoxyuridine
C00672  
2-Deoxy-D-ribose 1-phosphate
C00705  
dCDP
C00813  
Barbiturate
C00881  
Deoxycytidine
C00906  
5,6-Dihydrothymine
C01013  
3-Hydroxypropanoate
C01103  
Orotidine 5'-phosphate
C01168  
Pseudouridine 5'-phosphate
C01346  
dUDP
C01368  
3'-UMP
C01563  
Carbamate
C02067  
Pseudouridine
C02170  
Methylmalonate
C02354  
2',3'-Cyclic CMP
C02355  
2',3'-Cyclic UMP
C02376  
5-Methylcytosine
C02642  
3-Ureidopropionate
C03997  
5-Hydroxymethyldeoxycytidylate
C05100  
3-Ureidoisobutyrate
C05145  
3-Aminoisobutyric acid
C05281  
5-Methylbarbiturate
C05822  
3'-CMP
C06198  
P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  
2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  
2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  
3-Oxo-3-ureidopropanoate
C20231  
(Z)-3-Ureidoacrylate peracid
C20249  
(Z)-3-Peroxyaminoacrylate
C20253  
Aminoacrylate
C20254  
Ureidoacrylate
KO pathway
 

DBGET integrated database retrieval system