KEGG   PATHWAY: xft00020
Entry
xft00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xylella fastidiosa Temecula1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xft00020  Citrate cycle (TCA cycle)
xft00020

Module
xft_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xft00020]
xft_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xft00020]
xft_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xft00020]
xft_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xft00020]
Other DBs
GO: 0006099
Organism
Xylella fastidiosa Temecula1 [GN:xft]
Gene
PD_0750  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PD_0234  rpfA; aconitase [KO:K01681] [EC:4.2.1.3]
PD_0236  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PD_2056  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PD_1973  icdA; isocitrate/isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
PD_0760  odhA; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
PD_0759  sucB; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
PD_0758  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PD_1810  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PD_1931  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
PD_1930  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
PD_0352  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PD_0353  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
PD_0350  succinate dehydrogenase membrane anchor subunit [KO:K00241]
PD_0351  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
PD_0947  fumB; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PD_0763  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PD_0492  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PD_1752  yojH; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PD_1505  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
PD_1809  pdhB; dihydrolipoamide acetyltranferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xft00010  Glycolysis / Gluconeogenesis
xft00053  Ascorbate and aldarate metabolism
xft00061  Fatty acid biosynthesis
xft00190  Oxidative phosphorylation
xft00220  Arginine biosynthesis
xft00250  Alanine, aspartate and glutamate metabolism
xft00280  Valine, leucine and isoleucine degradation
xft00350  Tyrosine metabolism
xft00470  D-Amino acid metabolism
xft00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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