KEGG   Photorhabdus asymbiotica: PAU_01723
Entry
PAU_01723         CDS       T00941                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (trcf)
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
pay  Photorhabdus asymbiotica
Pathway
pay03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pay00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PAU_01723 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pay03400]
    PAU_01723 (mfd)
Enzymes [BR:pay01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PAU_01723 (mfd)
DNA repair and recombination proteins [BR:pay03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      PAU_01723 (mfd)
SSDB
Motif
Pfam: MFD_D3 TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H SNF2-rel_dom ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: CAQ83815
UniProt: C7BTG0
Position
complement(1946158..1949604)
AA seq 1148 aa
MSSKYRYELPERHGDNRQLGRLTGAACAVECAEIVERHQGPVVLITKDMQNALRLHDEIH
QFTDCPIDLLSDWETLPYDSFSPHQEIISNRLSTLYRLPTMTKGILILPINTLMQRVCPH
EYLHGHALVMHKGQKLSRNKLRAELEQAGYRSVEQVLEHGEFATRGALLDLFPMGSEHPY
RIDFFDDEIDSLRIFDVDSQRTLTEVKQINLLPAHEFPTDKETIELFRSQWRERFEVRRD
GEHIYQQVSKGTLPAGIEYWQPLFFKQPLPSLFDYLPDNTLIISQDVNSSAERFWQDVQQ
RFINRKTDPMRPLLSPEELWLPADKLFSKLKNWPRIQLKTEELSKKTNHTNLDYQRLPDL
SIVAQNKAPLDKLRRFLEQFNGRVIFSVESEGRKETLQELLSRIKIKPIKISKLHEAQQP
GHFLMVGAAEHGFIDKKNELTLICESDMLGERVVRRRQDTRRTINTDTLIRNLAELRPGQ
PVVHLEHGVGRYQGLTSLEAGGIKAEYLILSYAGDDKLYVPVSSLHLISRYAGGADENAP
LHKLGGEVWSKARQKAAEKVRDVAAELLDIYAHRAVKPGFAFKHDWEQYQLFCQSFPFET
TPDQEQAINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRSAFLAIQNNKQVAVLVPTTLL
AQQHFDNFRDRFANWPVRIEMISRFRSAKEQQQVVEMAAVGKVDIIIGTHKLLQSNLRWK
DLGLLIVDEEHRFGVRHKEQIKAMRADVDILTLTATPIPRTLNMAMSSMRDLSIISTPPA
RRLAVKTFVREYDSLVVREAMLREILRGGQVYYLYNDVENIEKAKLRLEKLVPEARIAIG
HGQMRERDLERVMTDFHHQRFNVLICTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
EQSGQMTTIGFTLYMELLESAVDSLKAGREPSLEDLTNSQTDVELRMPVLLPDDYIPDVN
IRLSFYKRIASAKDKLELAELKVELIDRFGTLPDPGRYLLQSADIRLSAQKLGIKRIEAH
EKGGFIEFSEKNNVDSTYLIGLLQKQPEIYRLDGPAKLKFITDLNEKTLRLEFIQQLLGS
FEQHQLSA
NT seq 3447 nt   +upstreamnt  +downstreamnt
atgtcctcaaaataccgttatgaacttcctgaacgccacggcgataaccgccagttaggt
cggcttactggtgcagcctgtgctgtagagtgtgctgaaattgtcgaacgccatcaaggc
cctgtcgtgctgataaccaaagatatgcaaaacgctttacgtttgcatgatgaaatccat
cagtttaccgactgccctatcgatctactttctgactgggaaacgctgccctatgacagt
ttttctcctcatcaggaaattatttccaaccgcctatctacactttatcgtctgccaacg
atgacgaagggtattttaatcctgccgataaataccttaatgcagcgggtttgcccacat
gaatatcttcacgggcatgcactggttatgcataaagggcaaaaactctctcggaataaa
ctccgcgctgaattagaacaggcaggatatcgcagcgttgaacaggttcttgaacatggt
gaatttgccacgcgaggcgcgttacttgaccttttcccaatgggaagtgaacacccttat
cgtatcgattttttcgatgatgaaattgatagtctgcgaatctttgatgttgacagccag
cgcacgctgactgaggtcaagcaaatcaacttactacctgctcatgaattccccacagat
aaagaaactattgaactgtttcgtagccaatggcgggagcgtttcgaagtccgccgtgat
ggtgaacacatttatcagcaagttagtaaaggcacgctaccagcaggaatagaatattgg
caaccgttgttctttaagcaacccttaccatcactgtttgattatttaccagataatacc
ctgattatcagtcaggatgtcaacagctctgctgaacgcttctggcaggatgttcaacaa
cgttttataaaccgcaaaactgacccaatgcgaccgcttttatcaccggaagaactttgg
cttccggctgataagctattctctaaactgaaaaactggcctcgtattcaactcaaaacc
gaagaacttagtaaaaaaactaaccacacaaatcttgattatcaacgactacctgattta
tccattgtcgcgcaaaataaagcgccgctggataaactccgccgtttccttgaacaattc
aatggtcgtgttattttctccgttgagagcgaaggccgtaaagaaacgctgcaagaatta
ttgtcacgaataaagattaaaccaattaaaatcagcaaattgcatgaggcacaacaacca
ggtcactttttgatggttggcgcggctgaacatggctttattgacaaaaagaatgaactt
actctgatctgtgaaagtgacatgctcggagagcgtgttgtccgccgtcgtcaggatact
cgccgcactatcaataccgatactctgatccgtaaccttgcagaattacgccccggtcaa
cccgtcgtccatctggaacatggtgttggtcgttaccaaggattaacctctctcgaagcc
ggtggcatcaaagcagaatacctgatactaagctatgcgggtgatgacaaactctatgtc
cctgtatcttcactgcatttaattagccgctacgcaggtggtgcagatgaaaatgcacca
ttacataaattaggcggagaagtatggagcaaagctcgtcaaaaagccgcggagaaagtc
cgcgatgtggccgctgagctgcttgatatttatgcccaccgtgcagtaaaaccaggattc
gcctttaaacacgattgggaacaatatcagctattctgtcaaagcttcccattcgaaacc
acgccagatcaggaacaggctatcaacgcagttctggatgacatgtgtcaacctattgca
atggatcgtctggtttgcggtgatgtggggtttggtaaaaccgaagttgcaatgcgctcc
gcatttctggcaatccaaaataacaaacaagtggctgtcctggttccaacaacacttctg
gctcagcaacactttgacaatttccgtgaccgttttgctaactggcctgtacgtattgag
atgatatcccgctttcgcagtgcaaaagagcagcaacaagtggttgaaatggcagccgtt
ggaaaagtcgatattatcattggtacgcataagttattgcaaagtaacctacgctggaaa
gatcttggtttgttaatcgtcgatgaggaacaccggtttggtgtacgccacaaagaacag
attaaagccatgcgtgcggacgtcgatattctgacgcttaccgcaacacctattccacga
acactcaatatggcaatgagtagcatgcgggatctatcgatcatttcaacacctcccgct
cgccgtctggcagtcaaaacattcgttcgcgaatatgacagcctagttgttcgagaagca
atgctgcgtgaaatactgcgtggtggccaagtttactatctctacaatgacgttgagaat
attgagaaagcaaaattacgtcttgaaaaattggtaccagaagcacggatcgccattggt
catggacagatgcgagagcgagatttagaacgggtgatgactgacttccatcatcaacga
tttaatgtccttatctgtactacgattattgaaactggcattgatattccaagcgctaac
actatcatcattgaacgtgctgaccatttcggccttgctcaattgcatcaactgcgtgga
cgtgttggacgctctcatcatcaagcttatgcttatcttctgaccccacatccaaaagca
atgacagccgatgcccataaacgtctggaagcaatcgcctcgctcgaggatttgggggcc
ggttttgcgttggcgactcacgatcttgaaatccgtggtgccggtgagctacttggtgaa
gaacaaagcggccagatgacaactattggcttcacactctacatggagctattagaaagt
gctgtcgactcgctaaaagcgggtcgtgaaccttcacttgaagacttaacgaatagccag
actgatgttgaattacgcatgcctgtcttattgcctgatgattatattcctgatgttaat
atacgtttgtccttctacaagcggattgccagtgccaaagacaaattagaattagctgaa
ttaaaggttgaattgatagaccgattcggcacattaccagatccaggacgttatttatta
caatcagcagacattcgcctatctgcccaaaaattaggtattaagcgcatagaagcccac
gaaaaagggggatttattgagtttagtgaaaaaaataatgttgattcaacttatcttatc
ggcctgttacagaaacagcctgaaatttaccggctggatggtcccgctaagcttaaattc
attactgatttgaacgaaaagacattacgtctggaatttatccagcagttacttggttct
tttgaacagcatcaactcagcgcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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