KEGG   Pseudomonas azotoformans: AYR47_05670
Entry
AYR47_05670       CDS       T04879                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
pazo  Pseudomonas azotoformans
Pathway
pazo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pazo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AYR47_05670 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pazo03021]
    AYR47_05670 (rho)
   03019 Messenger RNA biogenesis [BR:pazo03019]
    AYR47_05670 (rho)
Transcription machinery [BR:pazo03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AYR47_05670 (rho)
Messenger RNA biogenesis [BR:pazo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AYR47_05670 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 OB_RNB AAA_22 NACHT Spore_III_AA
Other DBs
NCBI-ProteinID: AMN77849
UniProt: A0A127HTM8
Position
complement(1191028..1192287)
AA seq 419 aa
MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatctgactgaactcaagcaaaagccgattaccgacctgctccagctggccgaagaa
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgctctgctgacgcctcctatcttgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttatttcgccctgctcaaggtcgacacgatcaac
ttcgatcgtcccgagaacgcgaaaaacaagattctcttcgagaacctgacgccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggttccaccgaagacttgaccggtcgt
gtgatcgacctgtgcgccccgatcggcaaaggccagcgtggcctgatcgtcgcaccgccg
aaagccggtaagaccatcatgctgcagaacattgcagcgaacatcgcgcgtaacaatcct
gaagttcacctgatcgtgctgttgatcgatgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctccacgttcgatgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaggacgtg
gtgatcctgctcgactccatcacccgtttggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtattgaccggtggtgtcgatgcccacgccctggagaaaccgaagcgtttc
ttcggtgctgcgcggaacatcgaagaaggcggctcgctgaccattatcgccaccgcactg
gttgaaaccggttcgaagatggacgaagtgatctacgaagagttcaagggtactggcaac
atggaactgcccctggaccgtcgcatcgcggaaaaacgcgtgttcccggcgatcaacatc
aaccgttccggcacccgccgtgaagagttgctgaccgccgacgacgaactgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgaagtcgctgccatcgagttcctggtc
gacaagctgaaaaccaccaagaccaacgacgagttcttcttgtcgatgaaacgtaagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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