KEGG   Pseudomonas azotoformans: AYR47_09845
Entry
AYR47_09845       CDS       T04879                                 
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pazo  Pseudomonas azotoformans
Pathway
pazo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pazo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AYR47_09845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pazo03019]
    AYR47_09845
   03016 Transfer RNA biogenesis [BR:pazo03016]
    AYR47_09845
Enzymes [BR:pazo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     AYR47_09845
Messenger RNA biogenesis [BR:pazo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AYR47_09845
Transfer RNA biogenesis [BR:pazo03016]
 Prokaryotic type
  tRNA degradation factors
   AYR47_09845
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 OB_Dis3 SRP-alpha_N
Other DBs
NCBI-ProteinID: AMN78608
UniProt: A0A127HVQ3
Position
2130308..2132935
AA seq 875 aa
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV
LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAGKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVP
HLKQLYALYKVLLGARHVRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA
SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVQVMRVDLDERKIDFGMSDKPAESPGSRKKRGSEPTSKGKAAPAKAATAE
PAPAKAGRRPSAKEKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGKSRG
AESPSSKPSKHRKGPPKAGSGPAKSGGSRKPKAKS
NT seq 2628 nt   +upstreamnt  +downstreamnt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcatctcgccgatcggggttcgcctgctagc
cgtgagcagttggttgaagaattcggtctgaccaccgaagaccagctcgaagccctgcgc
cgccgtttgcgtgccatggaacgtgatgctcaactgatctacacccgccgtggtacttac
gcgcctgtggataagctcgacctgatcctgggccgcattgccggccaccgtgatggtttc
ggcttcctgatccccgacgacggcagcgatgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgatggcgaccgtgccctggcgcgcgtttccggcctggaccgtcgcggtcgc
cgtgaaggcgtgatcgtcgaagtggtgtcccgtgcccacgagtccatcgtcggccgttac
ttcgaagaaggcggcatcggctttgtggtgccggataacccgaaggtccagcaggaagtg
ctgatcactccgggccgtaatggcgccgccaaagtcggtcagttcgtcgaggtgaagatc
acccactggccaacggcacgcttccagccccagggcgatatcgttgaagtggtcggcaac
tacatggcgccgggcatggaaatcgacgttgcgctgcgcacctacgatattccccacgtc
tggcctgaggctgtgctcaaagaagccggcaagctcaagcctgaagtggaagagaaagac
aaagaaaaacgcatcgacctgcgccatctgccgttcgtcaccatcgacggcgaagatgcc
cgcgacttcgacgatgcggtctactgcgaagccaagccaggcaagctgcgcctgttctcc
ggtggctggaagttgtacgtcgcgattgccgacgtgtccagctacgtgaagatcggttcg
gccctggataacgaagcccaggtgcgcggcaactccgtgtacttccctgagcgcgtgatc
ccgatgctgcccgagcagctgtccaacggcctgtgctccctgaacccgaaagtcgaccgt
ttggccatggtgtgcgagatgaccatctcgaaaaccggcgaaatgactgactaccagttc
tacgaagcggtgatccattcccaggcgcgcctgacctacaacaaggtcagcactatcctg
gaaacgccgaagaccagcgaagccaaggccctgcgtagcgaatacgctggcgtggtgccg
cacctcaagcagctctatgcgctgtacaaggtgttgctgggcgctcgtcacgtacgtggc
gcgatcgactttgaaacccaggaaacccggattgtcttcggttccgagcgcaagatcgcc
gcaatcaccccgaccacgcgtaacgatgcgcacaagctgatcgaggaatgcatgctggcc
gccaacgtggccaccgctgaattcctgaagaagcatgaaattccagcgttgtatcgcgtg
cacgacggcccgccgccggagcgtctggagaagctgcgtgcattcctcggcgagctcggc
ctgtccctgcacaaaggcaaggacggcccgacgccgaaggactaccaggctctgctcgcc
agcatcaaggaccgtccggattaccatgtgatccagaccgtcatgctgcgctcgctgagc
caagcggtgtacagcgctgacaaccagggccacttcggcctgaattacgaggcgtacacc
cacttcacctcgccgattcgccgttacccggacctgctcacgcaccgcgcgatccgcagc
gtgatccactccaagcagaacaccccgcacgtcaagcgcgccggtgccatgaccattccg
aaagcacggatctatccgtacgacgaagcggccctggaacagctgggcgaacagtgctcc
atgagcgagcgccgcgccgacgaagccacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaagaccgcgtaggcgagactttccctggtgtgatcactgccgtgaccggcttt
ggtctgtttgtcgagctgaccgacatctacgtcgaaggcctggtgcacgtcaccgcgttg
ccgggtgactactaccacttcgaccctgtgcaccaccgcctggcgggcgagcgcaccggt
cgcagcttccgtttgggcgataccgtggaagtgcaggtcatgcgcgtcgacctcgacgag
cgcaagatcgacttcggcatgtccgacaagccagccgaatcgccgggcagccgtaaaaaa
cgcggcagcgaaccgaccagcaaaggcaaggcagcacctgctaaagcagcgaccgccgag
cctgcacctgccaaggccggtcgtcgtccgtccgcgaaggaaaaggcccccgaagcctac
cgcccaagcgatgcggcggcgaaaaacgccgagctgcgcaagagccgcgagttgaagcag
cagttgctcaacgaagccaaaagcggtggtaaagcggcgtctgggggaaagtcccgcggg
gcggaaagtccgtcgagcaagccaagtaaacaccgtaaaggcccgccaaaagcgggttcg
ggccctgccaagagtggcgggtcgcgcaaacctaaggccaagtcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system