KEGG T01472: PSEBR

Pseudomonas brassicacearum: PSEBR_a1156

Entry

PSEBR_a1156 CDS T01472

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

pba Pseudomonas brassicacearum

Pathway

pba03410	Base excision repair
pba03420	Nucleotide excision repair
pba03430	Mismatch repair
pba03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:pba03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pba03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pba03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:pba03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

330807876

NCBI-GeneID:

10470050

UniProt:

F2K8L8

Position

complement(1439469..1441157)

AA seq 562 aa
MKAFAELYAELDATTSSNAKLAAMQAYFTKASPQDAAWAVYFLSGGRPRQLVPVKILREL
AVQVSGLSLWLFEESYQAVGDLAETISLVLPESPHSSDEGLALWIEEKLLPLRGESPEIL
AEQLPALWAQLDRPSLMLCIKLITGSFRVGVSKLLVTRALAGMANLDSKRVAQRLVGYTD
LSHRPTAASYLKLIAAESADEHAQRGGQPYPFFLAHALSAPVEQFDTLLGPANDWQVEWK
WDGIRSQVIKRDGHLWVWSRGEELVTERFPELHALAQVLPDGTVIDGEIVVWKTARPVTG
DAFDPDAPLQPAVQPFALLQQRIGRKTLGKKILEDAPVVVMAYDLLEWQGEDWRSRPQAE
RRERLEALIASVHSPVLLPSPTVTGQDWFDLARQREASRRLGVEGMMLKARNALYGVGRT
KDMGVWWKWKIDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDNPPDSRERTLVPFAKAY
SGLTDAEMRQVDSIVRKTTVEKFGPVSSVTPTLVFELGFEGIALSNRHKSGIAVRFPRML
RWRQDKTVEEADTLATLQDLLK

NT seq 1689 nt +upstreamnt +downstreamnt
atgaaagccttcgccgagctgtacgccgaactggacgccaccacctcaagcaatgccaag
cttgccgccatgcaagcctatttcaccaaggcctcgcctcaggacgcggcgtgggccgtg
tacttcctgtccggcgggcgaccacggcaactggtgccggtaaaaatcctgcgggagttg
gcggtccaggtatccgggttgtcgctctggctgttcgaggaaagttatcaggccgtgggc
gacctggccgaaaccatttcgctggtattacccgaatcgccccatagctccgatgaaggc
ctggcgctgtggatcgaagagaagctgctgccgttgcgcggtgagtcgcccgaaatcctg
gctgaacagctcccggcgctgtgggcgcaactcgatcggccgagcctgatgctgtgcatc
aagctcattaccggcagctttcgcgtcggcgtgtcaaaactgctggtaacccgggccctg
gccggcatggccaacctggacagcaagcgggtggcccaacgcctggtgggctacaccgac
ctgtcccatcgtccgacggccgccagttacctcaagctgatcgcggccgaatccgccgat
gaacatgcccagcgcggcggccagccttatccgtttttcctggcccatgccctgtctgcc
ccagtggagcaattcgacaccctgctgggaccggccaacgactggcaggtggaatggaaa
tgggacggcatccgttcccaggtgatcaagcgcgatggccatttatgggtctggtctcga
ggcgaagaactggtgaccgagcgcttccccgaactgcacgccctggcgcaggtactgccc
gacggtaccgtgatcgatggcgaaatcgtggtgtggaaaaccgcccgaccggtgaccggg
gacgccttcgacccggacgcgccgttgcagccggcggtgcaacccttcgccctgttgcaa
cagcgcatcggtcgcaagaccctgggcaagaaaatcctcgaggatgccccggtagtggtg
atggcctacgacctgctggaatggcaaggcgaggactggcgcagccgcccccaggccgag
cgccgcgaacggctggaagccctgatcgccagtgttcacagcccggtgttgttgccatcg
ccgacggtcaccggccaggactggttcgacctcgcccggcaacgtgaagcctctcgccgc
ctcggtgtcgagggcatgatgctcaaggctcgcaacgcgctatacggcgtcggtcgcacc
aaggacatgggcgtgtggtggaaatggaagatcgaccccttcagcgtcgacgcggtgctg
atctacgcccagcgcggccacggccggcgcgccagcctgtacagcgactacaccttcgcc
gtatgggacaacccgccggacagtcgcgagcgcacgctggtgccgtttgccaaggcttat
tcagggctgaccgatgcagaaatgcgccaggtcgacagcatcgtgcgcaagaccaccgtg
gagaagttcggcccggtgagcagcgtcacgcccaccctggtgttcgaactgggtttcgaa
ggcatcgccctgtccaatcgccacaagagcgggatcgcggtgcgctttccacggatgttg
cgctggcgccaggataaaaccgtcgaagaggcagataccttggcaacgcttcaggacctg
ctgaaatag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

Download RDF

DBGET integrated database retrieval system