KEGG   Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a4386
Entry
PSEBR_a4386       CDS       T01472                                 
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
  KO
K10773  endonuclease III [EC:3.2.2.- 4.2.99.18]
Organism
pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pba00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    PSEBR_a4386
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pba03400]
    PSEBR_a4386
Enzymes [BR:pba01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     PSEBR_a4386
DNA repair and recombination proteins [BR:pba03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     PSEBR_a4386
 Prokaryotic type
     PSEBR_a4386
SSDB
Motif
Pfam: HhH-GPD HHH EndIII_4Fe-2S RecR_HhH HHH_5 HHH_8 DUF2400
Other DBs
NCBI-ProteinID: AEA70795
UniProt: F2KKR3
Position
5330561..5331199
AA seq 212 aa
MNAAKRLEIFRRLHEDNPEPKTELAYSSPFELLIAVILSAQSTDVGVNKATAKLFPVANT
PEAIYALGVEGLSEYIKTIGLFNSKAKNVIETCRLLIERHGSEVPQTREALEALPGVGRK
TANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVVEVEKKLMKFVPKEFLLDSHHWLI
LHGRYVCLARKPRCGSCRIEDLCEYKHKTSDD
NT seq 639 nt   +upstreamnt  +downstreamnt
atgaacgccgcaaaacgcctggaaatatttcgtcgccttcacgaggacaacccggaaccg
aaaaccgaactggcctattcctcgccgttcgagttgctgatcgcggtcatcctgtcagcc
cagtccaccgacgtcggcgtcaacaaagccacggccaaactgttcccggtggccaatacg
ccggaggccatctatgccctgggcgtcgaaggactgtccgagtacatcaagaccatcggg
ctgttcaacagcaaggccaagaacgtgatcgagacctgccgcctgctgatcgagcgccac
ggcagtgaagtcccgcagactcgcgaagcgctggaagcccttccgggggtcggccgcaaa
accgccaacgtcgtgctcaataccgcgtttcggcagttgaccatggcggtcgatacccac
attttccgcgtcagcaaccgcaccgggctggcccccggcaaaaacgtggtggaggtcgag
aagaaattgatgaaatttgttcccaaggaattcctgctggactcccatcactggctcatc
cttcacgggcgttacgtttgcctggcgcgcaagcctcgctgcggcagctgccgaatcgaa
gatttatgcgaatacaagcacaagacctccgacgattga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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