KEGG   Pogonomyrmex barbatus (red harvester ant): 105428363
Entry
105428363         CDS       T04903                                 
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pbar  Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03008  Ribosome biogenesis in eukaryotes
pbar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pbar00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    105428363
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105428363
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pbar03021]
    105428363
   03019 Messenger RNA biogenesis [BR:pbar03019]
    105428363
   03009 Ribosome biogenesis [BR:pbar03009]
    105428363
   03016 Transfer RNA biogenesis [BR:pbar03016]
    105428363
Transcription machinery [BR:pbar03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     105428363
Messenger RNA biogenesis [BR:pbar03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     105428363
Ribosome biogenesis [BR:pbar03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    105428363
Transfer RNA biogenesis [BR:pbar03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    105428363
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC_4 zf-CCHC
Other DBs
NCBI-GeneID: 105428363
NCBI-ProteinID: XP_011638948
UniProt: A0A6I9WAD4
Position
Unknown
AA seq 945 aa
MGVPAFFRWLSRKYPSVIVQCIEQKPISPDGICIPVNSAEPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKDEDEMMEAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETMEKINEIDRIRTELSLKGASLPPEKPKEEHFDSNCITPGTPFMARLSSCLHYYIH
DRLNNDPGWRNIKVILSDANVPGEGEHKIMDFIRRQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKMKPKPCDICGQLGHEMRDCTGAEPNQKPEENTYGSECQYIFVR
LNVLREYLERELYMPNLPFKYDFERAVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVA
LYKKAVYKTGGFLTDSGDVNLDRVQLIMSDLGDVEDEIFKKRQQNELAYKQREKEKKKRS
EVISSFKPTWIPAGQFAPTALGQKVKPIENPRYEAFKMRVMGRNYNTNAADNTNTNHALE
SMLRPENAGNRGQKRKIDEVTSKDDSDDDQAHDEVRLWEDGFKDRYYESKFDVSPDNLAF
RNNVALQYVRGLCWVLRYYYQGCASWRWYFPYHYAPFASDFINIGGLSTEFEKDTVPFRP
LEQLMGVFPAASSKHVPVPWAKLMTDPKSQIIDFYPEDFKIDLNGKKFAWQGVALLPFVD
EKRLFKALAPYYDSLTEAEKKRNVRGDDRLYVGIGNNGYNFIKGLYTNRVGFDKEVEISI
DGMRGTGFLSEDCVSDGGTLPSPVRGLPVRNNKIYCIKYKDPKYGSNHIFLARKLKGAKE
PPRVLKPQDFDAMNRKNGNQWTPQIGFTRTTQSASLGQAGHRMLEHHMNHNNRSAVYANI
PPPVNLYQQFHGYRSGSEYGQSNYGYNSAGSSQMHGPWASSYGMRQSNYPSLEYHHRNQY
NNHRQQSSRNSYQSSQQGYHSQRGNYSSTRGGGGGGHRDGWRRTM
NT seq 2838 nt   +upstreamnt  +downstreamnt
atgggtgttccagcattttttcgttggttaagccgcaaatatccctctgtaattgtccag
tgcatcgagcaaaagccaatatctccggatggaatatgcattcctgtgaattcagcagaa
ccaaatccaaatggagtggaatttgataatttgtaccttgatatgaatggtataatacat
ccctgtacacatcctgaggataagccagcacctaaagatgaggatgagatgatggaggct
atttttgaatgtattgacagattatttcgtattgtgagaccaaggaaattgctttacatg
gcgatcgatggagtcgcgcctagagctaagatgaatcagcaaagatctcgacgatttcga
gcatcaaaagaaacaatggaaaaaattaatgaaatagataggatacgtactgaattgagc
cttaaaggggcatccttgcctccagagaagccaaaagaagagcattttgatagtaattgt
attacaccgggcacaccatttatggcaagattatcttcatgtttgcattattacattcat
gatcgtttgaataatgacccaggttggagaaatattaaagtaatattaagtgatgctaat
gttcccggtgaaggagaacataaaataatggattttatacggcgacaaagagcacaaccc
gatcatgatcccaatacacaacatgttttatgtggagcggatgctgatttaattatgttg
ggtctcgctacacacgagcctaattttactattattcgtgaagagtttaaaatgaaacca
aaaccatgcgatatatgtggtcaattagggcatgaaatgcgagactgtacaggtgcagaa
ccaaaccaaaaaccagaggagaacacatatggatctgaatgccagtacatatttgtacga
ttaaacgttctaagagaatatttagagagagaattgtatatgccaaatctaccattcaaa
tatgactttgagcgtgctgtcgatgattgggtgtttatgtgtttcttcgtaggaaatgat
tttctacctcaccttccttctttagaaattagagaaggtgcaattgacagacttgttgct
ttatataaaaaagcagtatataaaacaggaggtttcttaacggatagtggcgatgttaat
ctagatcgtgttcaattaataatgtcagatcttggtgatgtagaagatgagatttttaag
aaaagacaacaaaatgaattagcttataaacaacgtgaaaaagagaagaagaaaagaagt
gaagttattagtagttttaaaccaacatggattcctgcaggacaatttgcgcccactgct
cttggacaaaaagtgaaacctatagagaacccacgttatgaagcttttaaaatgcgcgtt
atgggtagaaattataatacaaatgctgccgataatacaaacactaaccatgctttagaa
agcatgcttagacctgagaatgcaggtaatagaggacagaaacgtaaaattgatgaagtt
acatcaaaggatgattcagatgatgaccaagcgcatgatgaagtgcgactttgggaggat
ggttttaaagatcgatactatgaatctaaattcgatgtatctcccgataatctcgcgttt
agaaataatgttgctttacaatacgtgcggggcttgtgttgggttttgcgatattattat
caaggttgtgcatcctggagatggtattttccatatcattatgcgccatttgcaagtgat
tttattaatattggcggtctttctacagaatttgagaaggacactgtaccttttcgtcca
ttagaacaattaatgggtgtatttcctgctgctagcagtaaacatgtacctgtaccatgg
gcgaagttaatgactgatccaaaatcgcaaattatcgatttttacccagaagactttaaa
atcgatttgaatggaaagaaatttgcttggcaaggtgtagctttgcttccatttgttgac
gagaagagattatttaaagctttagcaccatattatgacagtttaacagaagcagaaaaa
aaaagaaatgttcgcggtgacgacagattgtacgtcggaataggcaacaacggttacaac
ttcataaaaggtctatatacgaatcgcgtaggcttcgataaggaagtcgaaataagtatc
gatggaatgcgaggcaccgggttcctatcagaagattgcgtgagtgatgggggtacgtta
ccctcgcccgtaaggggcttgccagttaggaacaacaaaatatactgcattaaatataaa
gatcccaagtatggtagcaatcatattttcctcgctcgaaaactgaagggggcaaaggag
ccaccacgagtcttgaaaccacaagactttgacgctatgaatcgcaaaaatgggaatcag
tggacgccgcaaatcggtttcacccgaactacacagtctgcttcgttaggacaggcagga
catagaatgctcgaacatcatatgaatcacaataacagatcggcagtgtatgcaaatatt
ccaccaccagtgaatttatatcagcaatttcatggttatcgaagcggatcggagtatggt
caatcgaattatggttacaacagtgccggttcgagtcagatgcatggaccatgggcgtcc
agttatggcatgcgccagtcgaattatccatccttggagtatcatcaccgtaatcagtac
aataatcatcgtcaacaatcctcgcggaacagttaccagagttcacagcaaggctatcac
agtcagcgagggaattactcgtcgactcgaggaggaggtggaggaggccaccgagacgga
tggcgacgaacgatgtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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