KEGG   Pogonomyrmex barbatus (red harvester ant): 105430904
Entry
105430904         CDS       T04903                                 
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 1
  KO
K12878  THO complex subunit 1
Organism
pbar  Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03013  Nucleocytoplasmic transport
pbar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pbar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105430904
  09122 Translation
   03013 Nucleocytoplasmic transport
    105430904
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pbar03019]
    105430904
   03041 Spliceosome [BR:pbar03041]
    105430904
Messenger RNA biogenesis [BR:pbar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     105430904
Spliceosome [BR:pbar03041]
 Complex C
  Other components
   EJC/TREX
    105430904
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    105430904
SSDB
Motif
Pfam: efThoc1 Death
Other DBs
NCBI-GeneID: 105430904
NCBI-ProteinID: XP_011642985
UniProt: A0A6I9WJL4
Position
Unknown
AA seq 662 aa
MAMFEVLRKDYSDYLQQHFKLLDVSLFQKKCIERCANDGDRKAAIDQALRDTLLVVLAEN
VSGNVHSLESYITFCIELCRKDLATASMPVMLLGDIFDSMTLDRCEQLFTFVENNVTVWK
EDLFFTACKNNLLRMCNDLLRRLSRSQQTVFCGRILLFLAKFFPFSERSGLNIISEFNLE
NYTEFGSEKXEEDDLEQITKDDDKSENKIPIDYNLYRKFWALQDFFRNPNQCYSKMHWKV
FSAHASNVLSAFASFKLEEQRSYPSTCIKMDTSMEGSHKETHYFAKYLTNQKLLELQLSD
SNFRRYVLLQFLILFQYLNSTVKFKAFLASGYETSETHELKPDQVEWVKTTTEQVYNLLI
ETPPDGPTFAETVKNILKREEHWNAWKNEGCPPFKKPTSDVSDEEPRKPKRPRRRIGDVI
RDAQAVGKYHVGNPELTKLWNLCPNNLEACKSKDRDFLPSLETYFEDAIMELDPAAMVDD
KYKKVNDGNFGWRALRLLARRSPHFFVHGNYPINKLPEYLETMIKKIAKDRPQTQSDVKL
ETEETPPSESTDQEFNEDVLKQESEQVDAESADMKTRKLNKVTSEMVAKLSESLKNDWKK
LATKFGYTNDEIAFFQSKTTPYEQCKTMLEIWAEEDEDASVENLAYILEGLKYTEALMIL
KS
NT seq 1989 nt   +upstreamnt  +downstreamnt
atggcaatgttcgaagtattgcggaaagattatagtgattatttacagcagcatttcaag
ctgttggacgtttcgttgttccaaaagaaatgcatcgaacgttgtgcgaacgacggtgat
aggaaagcggcgatcgatcaggcactccgagacactctactggtggtgttagcggaaaac
gtttctggcaatgtgcattctctcgaatcgtatatcacattctgtatagaattatgcagg
aaggatcttgcaacagctagtatgccagtaatgctactcggcgatatctttgattcaatg
acattagatagatgcgaacagttattcacctttgtggaaaacaatgtcaccgtgtggaaa
gaggatctgttttttactgcctgtaaaaataacttattgagaatgtgcaatgacttgctg
agaaggctatcacgttcgcagcaaactgtattttgcggcagaattctacttttcctggca
aaattctttccattttctgagagatctggtttgaatattattagcgagtttaatttggaa
aattataccgagtttggttcagaaaaanctgaggaagatgatttggaacagataactaag
gacgatgacaaatcagagaacaaaataccaattgattataatttatatagaaagttttgg
gcgttacaagatttcttcagaaatccgaatcagtgttatagtaaaatgcattggaaagtc
ttttcagctcatgcatctaatgtactatcagcatttgcttcttttaaattggaggagcaa
cgtagttatccttcaacatgcatcaagatggatacctctatggaaggctctcataaagaa
actcactattttgcaaaatatttaactaaccaaaaattattggaattgcagttgtcagac
tccaattttagacgatatgtattgctgcaatttctcattcttttccagtatctgaatagc
actgtaaaattcaaggccttccttgccagtggctatgagacaagtgaaacacatgagctc
aagccggatcaagtcgaatgggtgaagaccactactgaacaagtttataatctattaatt
gagacaccaccagatggtcccacatttgcggagaccgtgaaaaatattttgaaacgtgag
gaacattggaacgcatggaagaatgaaggttgtccgccatttaaaaaaccgacatcggat
gtcagtgatgaggaaccgcgaaaaccaaagagaccaagacgacgtattggtgatgtaatt
agagatgcgcaagcagttggcaaatatcacgtgggaaatccagaacttacgaaattatgg
aatctatgtccaaataatctcgaggcatgcaaatctaaggatagagattttcttccatcc
ttagaaacttatttcgaagatgccataatggaattagatcctgcggcgatggttgatgat
aaatacaagaaagtaaatgatggtaattttggttggagagcgttgagactattagcgagg
cgaagtccacatttctttgtacatggcaattatcctataaataaattgcctgaatatctt
gagacaatgatcaagaaaattgccaaggatcgtccacagacacaatctgatgtgaaattg
gaaactgaggaaacgccaccatcagaatctaccgatcaggaattcaatgaagatgtttta
aagcaggaaagtgaacaagtagatgctgagagtgccgatatgaaaacgaggaagttgaac
aaagtcacatcggaaatggtagcgaaattatcggaaagtctgaaaaatgattggaaaaag
ttagctacgaaatttggttatacaaatgatgagattgctttcttccaaagcaaaacaaca
ccgtacgagcaatgtaaaactatgctcgagatatgggcagaagaagacgaagatgcatca
gttgaaaatttggcttatattttagaaggtttaaaatacacagaggcattaatgatattg
aaatcttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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