KEGG   Pseudomonas brassicacearum DF41: CD58_06125
Entry
CD58_06125        CDS       T03174                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
pbc  Pseudomonas brassicacearum DF41
Pathway
pbc03030  DNA replication
pbc03430  Mismatch repair
pbc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pbc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CD58_06125
   03430 Mismatch repair
    CD58_06125
   03440 Homologous recombination
    CD58_06125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pbc03032]
    CD58_06125
   03400 DNA repair and recombination proteins [BR:pbc03400]
    CD58_06125
Enzymes [BR:pbc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CD58_06125
DNA replication proteins [BR:pbc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     CD58_06125
DNA repair and recombination proteins [BR:pbc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     CD58_06125
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DNA_pol_IIIA_C tRNA_anti_2 HROB
Other DBs
NCBI-ProteinID: AHL32492
UniProt: W8PNA1
Position
1372840..1376361
AA seq 1173 aa
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG
IKPICGADLWLSNKDPDAPLSRISLLVMNALGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGLALLSGNPEEAEVLARDWMAVFPDRFYIEVQRTNRPNDEEH
LHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRPKNYSDQQYLK
SAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EDRLRVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIDGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFQDEP
KAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFAEAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKLQTQDLKGDQLRWLGELFKRHRGACPITMEYVRPDAKAV
LQFGEGWRIDPADALIQALRDQFGKDNVFLQYR
NT seq 3522 nt   +upstreamnt  +downstreamnt
atgccggcttcattcgttcatctacgcctgcacactgagtactccctggtcgatggcctg
gtgcggatcaagccattggtcaagaccctggtgggcatgaacatgcctgccgtggcggtc
accgaccagaacaacatgtgttcgctggtcaagttctacaaggccgcgatgggcgccggg
atcaagccgatctgcggtgccgacctgtggctgtcgaacaaggatccggatgcgccgctg
agccgtatcagcctgttggtgatgaacgccttggggtatcgcaacctcaccgagctgatt
tcccgcggctttatcgatggtcaacgcaatggttcgatcatcatcgagcgcgagtgggtg
gccgaagccagcgaagggttgatcatgctgtcggcggccaaggagggtgaaatcggcctg
gccctgctcagtggcaaccccgaagaagccgaagtcctggcacgcgactggatggcggtg
ttcccggaccgtttttacatcgaagtacaacgcaccaaccgccccaacgatgaagagcac
ctgcacgccgccgtggccctggccgacaagatcggcgcgccactggtggcgaccaatgac
gtgcggttcatcaagcaggaagatttcgaggctcacgaaacccgcgtttgcatcggtgag
ggccgggcccttgacgatccacgccgtccgaagaattacagcgaccagcaatacctcaag
agcgccgaggaaatggccgagttgttcagcgacctgcccgaggcgctggaaaacaccgtc
gagatcgccaagcgctgcaacatcgaagtgaagctgggcaagcacttcctgcccaacttc
ccgatccccgatggcatgaccatcgacgagtatttccgcaaggtgtctttcgacggtctc
gaggaccgcctccgcgtcctgctgccaaaggacactactgaagattacgaagccaagcgc
caggtgtatgtcgaccggttgaatttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgtgatggactttatccagtgggccaagaacaacggcgtgccggtg
ggccctggccgtggatcgggcgccgggtcgctggtggcctatgtgcagaagatcaccgac
cttgacccgttggaatatgacctgctgttcgaacgtttcctaaatccggaacgggtatcc
atgcccgacttcgacgtcgacttctgcatggatgggcgcgaccgggtgattgactacgtg
gccgagaagtacggtcgcaacgcggtgagccagatcatcactttcggttccatggctgcc
aaggctgtggtgcgcgacgtggcgcgggtgcagggcaagtcctacgggctggcggatcgt
ctgtcaaagatgattccgttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gaaatcctgcgggacttcatcaaggtcgatgaagaggccgccgaaatctgggagatggcc
cgcaagctcgaaggcgtggtgcgtaacgtcggcaagcacgccggtggcgtggtgatcgcg
ccgaccaagctgactgacttctcgccaatctattgcgatgaagagggcgacggcctggtc
acccagttcgacaaggatgacgtcgaggcggcgggcctggtgaagttcgacttcctcggc
ctgcggaccctgacgatcatcgactgggcgttgaaaaccatcaaccgtgaccgggccaag
gtgggcgaagagccgctggacatcgccttcatcccgctcgatgacaaaccgacctacagc
ctgctgcaaaaagccgaaaccacggcggtgttccagctggaatcccggggcatgaaagag
ctgatcaaaaagctcaagcccgactgcctggaagacctcatcgcactggtggccctgttc
cgtccgggcccgctgcaatcgggcatggtggatgacttcatcaaccgtaagcacggccgc
gccgaactggcctacccgcactcggattaccagtatgaaggcttgaaaccggtgctggca
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagattgcccaggtcatggcc
ggctacaccctcggcggcgcggacatgctgcgtcgggccatgggcaagaaaaagcccgag
gagatggccaagcaacgcggcggtttcattgatggttgcgccaccaacggcatcgaccct
gacctggccggtaacattttcgacctggtggaaaaattcgccggctacggcttcaacaaa
tcccactctgccgcctatggcctggtgtcctaccagactgcctggctgaaggcgcattac
ccggcgccgttcatggccgcggtactctcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcggaccatgaagctgcgcctcgatgccccggacgtgaacgct
tcggagttcaagttcacggtgaacgacgagggccgcatcatctatggcctgggtgcgatc
aaaggcgtaggcgaagggccggtggaggccatcaccgaagcgcgccaggacgggccgttc
aaggacctgttcgatttctgcgcccgggtcgacctcaagcgtatcaacaagcggaccctc
gacggcttgatccgcagtggcgcgctggaccgtctgggtccgtacttccaggatgagccc
aaggcctatcaggccaacatcgaccgcaaccgcgcggtgttgctggcggccatggaagaa
gcgatcaaggccgccgagcagacggcccgtacccacgacagtggccatgccgacctgttc
ggtggcctgttcgtcgaggaagatgccgatgtctacggcaatcatcgcaaggccaaggag
ctgaccctcaaggagcgcctcaaaggtgagaaagacaccttgggcctgtacctgaccggt
cacccgatcgacgagtacgaaggcgagatccgccgtttcgcccgccagcgcatcatcgac
ctcaagccggcgcgcgatacgcaaaccgtcgccgggatgatcattgccctgcgggtgatg
aagaacaagaagggcgacaagatgggcttcatcaccctcgacgaccgctccgggcgcatc
gaggcttcgctgtttgccgaggcgttccactcggcgcagtcgttgttgcagactgacgcg
atggtggtagtggaaggcgaggtcagtaacgacgacttttccggtggcctgcggctgcgg
gtcaagcgggtgatgagcatggaagatgcccgcaccaacctggccgaaagcctgcgcctg
aagttgcagactcaggacctcaagggcgatcagctgcgttggttgggtgaattgttcaag
cgccatcgcggtgcctgcccgatcaccatggagtatgtgcgccccgacgccaaggcggtg
ttgcagttcggcgagggctggcgaatcgatccggcggatgcgttgattcaagccttgcgt
gaccagttcggcaaagacaacgtcttcctccaataccgttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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