KEGG   Paracoccidioides lutzii Pb01: PAAG_08908
Entry
PAAG_08908        CDS       T02230                                 
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit pan2
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
pbl  Paracoccidioides lutzii Pb01
Pathway
pbl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pbl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAAG_08908
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pbl03019]
    PAAG_08908
Enzymes [BR:pbl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     PAAG_08908
Messenger RNA biogenesis [BR:pbl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PAAG_08908
  mRNA degradation factors
   3'-5' decay
    Pan complex
     PAAG_08908
SSDB
Motif
Pfam: UCH_1 PAN2_N RNase_T UCH
Other DBs
NCBI-GeneID: 9092395
NCBI-ProteinID: XP_015701586
UniProt: C1HDR5
Position
Unknown
AA seq 1177 aa
MDPDWDEVSRLAVPPSGPHVLPTVASTIAFDDTQELLWTGNEFGRVASFYGPELQRYTSV
RAHPASEGPVRQLLFHHKGVISVSSKSVHFISRRGLTIWHITHEEMEDLRCMSFTQQSSK
IIVAGCQPIMFHIDVDKGTIVDKITTEFRYTIMKKSRYLCAATDTGSVNALSLSDFSVVK
SWKAHGTVVNDMDARNDYLVTCGFSVRHLGSPIVDPLANVYDLKTLTPLPPIPFHAGAAY
VRMHPKLQTTSFVASQTGQLQVVDLMNPNAINLRQANVTFMLGLEISPSGEALAVNDAEC
LVHLWGSPSKIHFNEMSKESEFADVPSRPPLVDWLNDTPLNVIGMPYYHERLLSAWPSHM
VFEIGSIPPQVDQAITPYLHAGEIGHYAPNPRKTRRYQVENTRAQPIPEPALAAPKFLSE
RARAQAKAKFNSNLDEAAKNLAEATITQDAEEDPLLKYSNVEIKYSKFGVDDFDFRYYNK
TVFSGLETHIANSFTNSLLQLYKFVPLIRNLALHHAATNCIYDNCLLCEMGFLFDMLDKA
NGQNCQATNLLKTFSGFREAANLGLLEENLTAKSLSLSIQSVNRFFLNQISHDFRLMFPH
SDQLDHTLSTDAVESIRCMLCRNETIRPGNAFVNELIYPTIDLKQSRRSSSYRFSSILKS
TIERETQNRGWCSHCRRYQQVSIRKTVHRMPLVLMINAAINNANIRQLWGTPGWLPEEVG
ILLEDGRIQCFEGEELKARQRNDIPNFTVYELVGLVAEIDIPDHHKPHLVSFINVAISSR
DTSEMDRWHLFNDFLVTEVSRDEVFAFAQTWKTPCSLAYQVQTARHGVDDSWKDELDTTL
LFYEWSMNNYRLTEACQILQADEKPSARTPVALDTEFVDLEKAEIEVKADGTQEMVRPSK
SGLARVSVIRGSGAAEGVPFIDDYITIKDPIVDYVTQYSGIKPGDLDPRTSSHNLVPLKV
AYKKLWLLLNLGCVFVGHGLASDFRKINIQVPKSQSVDTQYLFFHPSKNRRLSLRYLAWA
VFKEYIQEESTISTTYATSTDPAQAASEGHDSIEDARMALRLWKKFQEYEDAGIVSQMLE
EIFREGFKLGFKPPPRNFSNSLALSGTANSHLPVSGRNTPDLGIVAGTLSSGGSMNGSAP
STPGQAFRRSVALTPSNGSFAGGASKVPDIFGGSHLR
NT seq 3534 nt   +upstreamnt  +downstreamnt
atggatcctgattgggatgaagtttcccggctagctgttcctccttctggtccccatgtc
ctaccgactgtcgcctcaaccattgctttcgatgacacccaggaattgctatggacgggc
aatgaattcggacgggtggcctccttctatgggcctgaactccagagatatacgtccgtt
agagcccaccccgcatctgagggaccagtccgtcagcttctatttcaccacaaaggggtg
atatcggtttcttccaaaagtgtgcatttcatctcccggcgcggcctgacaatatggcat
attactcacgaagaaatggaagatctccgctgcatgagtttcacccagcagtcttcaaaa
ataatcgttgctggttgccagccaataatgtttcacattgacgttgacaaaggaaccatc
gtggacaaaattacgacggaattccgctatactataatgaagaaaagccgttacttgtgc
gctgcgacagatactggctctgtcaatgctctaagtttgtccgattttagcgtagtgaaa
agctggaaggcgcatggcactgttgttaatgatatggatgctcggaacgactaccttgtt
acttgcggcttttctgtacggcatctcggctcaccgattgtcgaccctttggcgaacgtt
tatgatctgaagaccttaacccctttacctccaatccctttccacgccggagccgcctat
gtccgaatgcacccaaaattacagacaacaagctttgtagcctcacaaaccggccagctc
caagtagttgatctgatgaatcccaacgcaattaatttacgacaggcaaatgtaacattt
atgcttggccttgaaatctccccttctggggaggctctcgctgtcaacgatgcggaatgt
ttagtgcacctctggggttctccctccaagatccactttaacgaaatgagcaaagaatcc
gaatttgcagatgttccttcacgtcctcctttagtggattggttgaacgatactcctctt
aatgtaatcgggatgccatattaccatgaacggctcctttctgcttggcccagtcatatg
gttttcgagattggaagcatccctccacaagttgatcaggctattactccatacctccat
gccggcgaaattggacactatgcccccaatccacgtaagacacggaggtatcaagttgaa
aatacacgtgcacagccgatccccgaacctgcattggccgctccgaagttcttgagcgag
cgagcaagggcgcaagctaaagccaagtttaacagtaacttggacgaagctgcaaagaat
ctggcagaagcaactattactcaagacgcagaagaagatccacttttgaaatatagtaat
gtcgagatcaaatatagcaaatttggcgtcgacgattttgattttaggtactacaataaa
actgtattttcagggttggaaacacatatagccaactctttcacaaactcccttctccaa
ctatacaaattcgttcccttgatccggaatctggctctccaccatgcagcaacgaactgc
atatatgacaattgtttactctgcgaaatggggtttttattcgatatgctagataaagca
aatgggcaaaactgccaagcaacaaacctgttaaaaacctttagcggttttcgagaagca
gcaaacctcggccttcttgaagaaaatctgaccgccaaatctctttcgttatctattcag
tctgtcaatcgattttttttgaatcagatctcccacgattttcgattgatgttcccacat
tccgaccagctagaccatacactatcaacagatgcagttgaatcaattcgctgcatgctt
tgtcgcaatgagaccatacgacctggtaatgcatttgtaaatgaactaatctatcctaca
atcgatcttaagcagtcgcggcgcagttcctcttatcgattttcgagtatcctcaagtct
acaatcgaacgtgaaacacaaaatcgaggctggtgcagccactgccgacggtaccagcaa
gtatcgatacgtaaaacagtgcataggatgccgcttgtgttgatgataaatgctgccatc
aataacgccaacatccgccaattgtggggtacgcctggatggctaccagaagaggttggg
atcctccttgaagatggtcgtattcaatgtttcgaaggcgaagagctaaaagcacgccaa
agaaatgacattcctaactttacggtctatgagctggtaggactagttgcggaaattgat
atccccgaccatcacaagccacatttggtttctttcatcaacgtcgccatttcctcacgt
gatacgagcgaaatggatcgttggcatctttttaacgattttctggttacagaggttagt
cgagatgaggtgtttgcatttgctcagacttggaaaacaccctgtagtttggcttatcag
gtgcaaactgctcggcatggcgtggacgattcctggaaagacgaacttgataccactctc
ctattttatgagtggtccatgaacaattatcgcctaactgaggcatgtcaaattctccag
gcagacgaaaagccgtctgcgcgaacccctgtcgctttggataccgagtttgttgacctg
gaaaaggcagaaattgaggtcaaggcagacggtacacaggaaatggttcggccgagtaaa
agtggacttgcgcgagtttctgtcatccgcggctctggcgctgccgaaggagtccctttc
atcgatgattatattaccatcaaggacccgatcgttgattatgttacacaatattcaggg
atcaagcctggcgacttagatccccgaaccagctctcataaccttgttcctttaaaagtg
gcttataagaagttatggcttcttctaaatttgggttgtgtcttcgttgggcatggtctg
gcttcggatttccgaaagattaatatccaggtccccaaatcacaatctgtggatacacag
tacctctttttccatccatcgaaaaaccgtcgcctcagtcttcgctaccttgcttgggct
gtttttaaagaatacatccaggaggaatcgaccatatccacgacttatgccacctctacc
gaccccgctcaagctgcttctgaaggtcatgattctatcgaagatgctcgcatggcccta
cgtctttggaagaaattccaagaatatgaagatgcgggcattgtctcgcaaatgctggaa
gagatattccgcgaaggctttaaactgggcttcaaacctcctccgcggaatttttctaat
tctcttgcgttatcagggactgccaactcacatctccctgtcagcggccgcaatacccca
gatttaggaatagttgctggaaccctgagttccggtggaagtatgaacggcagtgctcca
tctacccccggacaagcctttagaagatcggttgcccttactccaagtaacggtagcttt
gcgggaggagccagcaaggtgccagacattttcggaggcagtcatctacgatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (58)   

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