KEGG   Acidipropionibacterium acidipropionici ATCC 4875: PACID_25910
Entry
PACID_25910       CDS       T02345                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pbo  Acidipropionibacterium acidipropionici ATCC 4875
Pathway
pbo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pbo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PACID_25910 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pbo03021]
    PACID_25910 (rpoC)
   03400 DNA repair and recombination proteins [BR:pbo03400]
    PACID_25910 (rpoC)
Enzymes [BR:pbo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PACID_25910 (rpoC)
Transcription machinery [BR:pbo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PACID_25910 (rpoC)
DNA repair and recombination proteins [BR:pbo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PACID_25910 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AFV90367
UniProt: K7S720
Position
complement(2724786..2728664)
AA seq 1292 aa
MLDTNYYDRLQIGLATADQIRAWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSNVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMITSVDEEARHRDLPSLEAKVQAERSHMEKRRDAELEARRTKLEED
LAQLEADGAKADTRRKVKDGGEKEIRQIEHRAQRQLDRLDAVWDRFKNLKVQDLEGDEVL
YREMKSRFGKYFEGFMGAEAVKRRLHDFDLVAESESLRDIIKNGKGQKKTRALKRLKVVQ
PFIDSGNSPEGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVSGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKMHQCGLPKTMALELFKPFVMKRLADLEHAQNVKSAKRMVERQR
PVVWDVLEEVIKEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCSAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSTNNILKPADGRPVALPSHEMIIGAYFLTMALDGLKGEGR
AFSSVSEAIMAHDAGELEIGAKIKLRLHGVIPPHGETVRADGSVILDTTLGQALFNEVLP
ADYPFVDFLVGKKEIGRIVNTLAEERSQLEVAEILDRLKDVGFRWGSLSGVTVSIGDVQT
PPNKPEILAGYERRAAKVDKEYDRGAVTGEERRQDLIQIWTEATAELTAAMEANFTQTNP
IYMMVHSGARGNMTQMRQIAAMRGLVADPKGEIIPRPIKSNFREGLTVLEYFISTHGGRK
GQADTALRTADSGYLTRRLVDVSQDVIVREEDCGTTRGIFKTIAVDDGAGNLVPAKELET
SVYARCLAADAVDEKGEVVVEANSDLGDAEIKKMIAHGISRIKVRSVLTCVATQGCCARC
YGRSLSTGHVVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVVELFEA
RTPKGKSPIAEAAGVIRVEEAEHRRKLVLVRDDGEEDVEYPVPRRARLEFDVDNTHHVIR
DGVRVEAGEQLMGGTPDPQDVLRILGVRRVEEHLVAEVQKVYNTQGAGIHEKHIEIIIRQ
MMRRITVIESGDTPMMPGELADRPHYEAANRKAVAEGGRPAEGRPVLMGITKASLATESW
LSAASFQETTKVLTDAAINGKTDTLVGLKENVILGKLIPAGTGLERYRNMRVEPTAEAKA
AAFTMNYDPFDYDFGSSSAAVPLDDLDFGDMG
NT seq 3879 nt   +upstreamnt  +downstreamnt
gtgctggacaccaactactacgacaggctgcagatcggcctggccaccgccgatcagatc
cgcgcgtggagccacggtgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
cccgagcgcgacggcctgttctgcgagaagatctttgggcccacccgggactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcacccgctccaatgtgcgtcgtgagcggatgggccatatcgagctggccgcccct
gtcacccacatctggtacttcaagggtgtgccgtcgcggctgggctacctgctcgacatc
gcgccgaaggacctcgagaaggtcatctacttcgcggcctacatgatcacctcggtcgac
gaggaggcgcgccaccgcgacctgccctccctggaggccaaggtccaggccgagcgcagc
cacatggagaagcgtcgcgacgccgagcttgaggcccgccgcaccaagctggaggaggac
ctcgcacagctcgaggccgacggcgccaaggccgacacccgccgcaaggtcaaggacggc
ggggagaaggagatccgtcagatcgagcaccgcgcgcagcgccagctcgaccgtctggac
gccgtgtgggaccgcttcaagaacctcaaggtccaggacctcgagggcgacgaggtgctc
taccgcgagatgaagagccgcttcggcaagtacttcgaggggttcatgggggccgaggcc
gtcaagcgccgcctccacgacttcgacctggtggccgagtcggagtccctgcgggacatc
atcaagaacggcaagggccagaagaagacccgcgctctcaagaggctgaaggtcgtccag
cccttcatcgattccgggaactccccggagggcatggtgctggacgccgtgccggtcatc
cccccggatctgcgcccgatggtgcagctggacggcggccggttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggctgaagcgactgctggatctg
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggaggctgtcgactcg
ctgttcgacaacggccgtcgcggccgcccggtctccgggcccggcaaccgtccgctgaag
tcgctctccgacatgctgaagggcaagcagggccgtttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagatgcatcag
tgcggtctgccgaagacgatggccctggagctcttcaagcccttcgtcatgaagcgtctg
gccgatctggagcacgcccagaatgtgaagtccgccaagcggatggtggagcgtcagcgt
ccggtggtctgggatgtcctcgaagaggtcatcaaggagcacccggtgctgctgaaccgc
gcacccaccctgcaccgtctgggcatccaggccttcgagccccagctgatcgagggcaag
gccatccagcttcacccgctggtctgctcggccttcaacgccgacttcgacggcgaccag
atggccgtgcacctgcccctgtccgccgaggcccaggccgaggcgcgggtgctgatgctg
tcgaccaacaacattctcaagccggctgacggccgcccggtcgccctgcccagccacgag
atgatcatcggcgcctacttcctcaccatggccctggacgggctcaagggcgagggccgg
gccttctcctcggtctccgaggcgatcatggcccacgacgctggcgagctggagatcggc
gcgaagatcaagctgcgcctgcacggcgtcatcccgccgcacggcgagacggtgcgcgcc
gacgggtcggtgatcctcgacacgactctgggtcaggccctgttcaacgaggtgctgccc
gccgactaccccttcgtcgacttcctggtcggcaagaaggagatcgggcggatcgtcaac
accctcgccgaggagcggagccagctggaggtggccgagatcctcgaccgtctcaaggac
gtcggcttcaggtggggttcgctgtccggcgtcaccgtgtccatcggtgacgtccagacc
ccgccgaacaagccggagatcctcgccggctacgagcgtcgggccgccaaggtggacaag
gagtacgaccgcggcgccgtgaccggcgaggagcgtcgtcaggacctcatccagatctgg
accgaggccaccgccgagctgaccgccgccatggaggccaacttcacccagaccaacccg
atctacatgatggtgcactcgggcgcacgagggaatatgacccagatgcgtcagatcgcc
gccatgcgaggcctggtggcagacccgaagggcgagatcatcccccgcccgatcaagtcg
aacttccgcgagggcctgacggttctggagtacttcatctcgacccacggcggccggaag
ggccaggccgacaccgctctgcggaccgccgactcgggctacctgacccgtcgtctggtc
gacgtctcccaggacgtcatcgtccgcgaggaggactgcggcacgacccgcggcatcttc
aagacgatcgccgtcgacgacggcgccgggaacctggtgcccgccaaggagctggagacc
tcggtctacgcccgctgcctggccgccgacgcggtcgacgagaagggtgaggtggtcgtc
gaggccaactccgacctgggcgacgccgagatcaagaagatgatcgcccacggcatcagc
cggatcaaggtgcgctcggtgctcacctgcgtggcgacccagggctgctgcgcccggtgc
tacggccgatccctgtcgaccggacatgtggtggacgtcggcgaggccgtcggcatcatc
gccgcccagtcgatcggtgagccgggaacccagctgacgatgcgtaccttccacaccggt
ggtgtggccggtgacgacatcactcagggtctgccgcgtgtcgtcgagctcttcgaggcc
cgcaccccgaagggcaagtcgccgatcgccgaggccgccggagtcatccgggtcgaggag
gccgagcaccgccgcaagctggtgctggtgcgcgacgacggtgaggaggacgtcgagtac
ccggtgccgaggcgcgcccgactcgagttcgacgtcgacaacacccaccacgtcatccgt
gacggggtgcgcgtcgaggccggcgagcagctgatgggcggtacccccgaccctcaggac
gtgctgcggatcctcggcgtgcgcagggtcgaggagcatctggtggccgaggtgcagaag
gtgtacaacacccagggcgccggcatccacgagaagcacatcgagatcatcatccgccag
atgatgaggcggatcaccgtcatcgagtccggcgacaccccgatgatgcccggcgagctg
gccgatcgtcctcactacgaggccgcgaaccgcaaggccgtggccgagggcgggcgtccc
gcagagggccgtccggtgctgatgggcatcacgaaggcgtcgctggccaccgagtcctgg
ctgtcggcggcctccttccaggagaccaccaaggtgctcaccgatgcggcgatcaacggc
aagaccgacaccctcgtcggcctgaaggagaatgtcatcctcggaaagctcatcccggcc
ggcaccggcctggagcgctaccgcaatatgcgcgtcgagccgaccgccgaggcgaaggcc
gcggccttcacgatgaactacgatccgttcgactacgatttcggatcgagctctgcggcg
gtgccgctggatgacctcgacttcggcgacatgggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (24)   

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