KEGG T01298: PB2503

Parvularcula bermudensis: PB2503_01927

Entry

PB2503_01927 CDS T01298

Definition

DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

pbr Parvularcula bermudensis

Pathway

pbr03410	Base excision repair
pbr03420	Nucleotide excision repair
pbr03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:pbr03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pbr03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pbr03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

304319962

NCBI-GeneID:

9708629

UniProt:

E0TBX1

Position

304872..306485

AA seq 537 aa
MNRFAALLESLIYTPSRNGKIRLLTEYFASTPDPDRGWAVAAMTRDLDIKSVKPAMIKTL
VEERVDPVLFGLSYDYVGDLAETVSLIWPGQEQRNYIPTLTDIVETLGEISRQEAPSVVA
DWFDALSPPARWALIKLITGGLRIGVAARLVKLALAEFGGQPVQDIEELWHGLEAPYRDL
FAWLEGRSPRPAQAAKAPFRPVMLAHPVEEKDQPKIDLTEMMAEWKWDGIRVQTVVEDGV
KRLYTRTGDDISGTFPDLLASLNEEVAIDGELLIFDPAITDRFVVRPFNDLQQRLNRKVV
SKKLLEESPAFIRAYDLLWARGEDLRPLPFSARRAHLEEISQQGAFPRLDLSPVIPLSSW
EALADLRANPPEDAIEGVMLKRADAPYVPGRPKGQWWKWKREPFLVDAVLMYAQRGHGKR
SSFYSDYTFGVWRTGKDGEELVPVGKAYHGFTDLELKKIDKFVRDHTIDRFGPVRAVRAT
REEGLVFEVAFEGLQRSSRHKSGIAMRFPRINRLRWDKPTAEADRLETLEAMLPATA

NT seq 1614 nt +upstreamnt +downstreamnt
gtgaatcgctttgccgccctgcttgagagtttgatttatacgccgtcgcggaacggcaaa
atccgtcttttgacggaatatttcgcatcgacccccgatcccgatcggggctgggcggtg
gcggccatgacccgcgacctcgatatcaaatcggtgaagccggccatgatcaaaaccttg
gtcgaggagcgggtggacccggtcctgttcggtctctcctacgattatgtcggtgatctg
gcggagaccgtgtcgctgatctggcccgggcaggaacagcgaaactacatccccaccctg
accgatattgttgagaccctgggcgagatttcccgtcaagaggccccaagcgttgttgcc
gactggttcgatgccctctcgccgccggcacgctgggcactgatcaaattgattaccggc
ggactgcgaatcggcgtggccgcacggctcgtcaagttggccctggctgagttcggcggc
caaccggtgcaggacatagaggagctgtggcacgggcttgaggccccctatagggacctt
ttcgcctggcttgaggggcgcagcccccgtcccgcccaggccgcaaaggcaccgttcagg
ccggtgatgttggcccatccggtggaagagaaagaccagccgaaaatcgacctcacagag
atgatggccgaatggaaatgggacggcatccgggtgcagacggtcgtggaggacggggtc
aagcggctatatacccggacgggggacgatatttcggggacctttcccgacctcctggcc
agcctcaacgaggaggtcgccatcgacggtgagctcctgatcttcgaccctgctataacc
gaccggtttgtggtcagaccgttcaacgacctccagcaacgcctcaaccgaaaggtcgtc
tccaagaagctattggaggagagccccgccttcatccgcgcctatgacctcctatgggcg
agaggggaggatctccgtcccctgccctttagcgcgcggcgcgcccatctcgaagagatc
agtcagcagggggcgttcccgcggctggatttgtcgccggtgattccgctgagcagctgg
gaggcccttgccgatttgcgcgcaaacccgccggaggacgccattgagggcgtgatgtta
aaacgcgccgatgccccctatgtccccggccggccgaaagggcagtggtggaaatggaag
cgcgagcccttcctcgtcgacgcggtcctgatgtacgcgcaaagggggcacggcaagcgc
tcgagcttttattccgactataccttcggtgtatggcggacggggaaggacggcgaagaa
ttggtcccggtggggaaagcctatcacggctttacggacctggaactcaagaagatcgac
aaattcgttcgggatcatacgattgaccgtttcgggccggttcgggcggtgcgggccaca
cgggaggaagggctcgtcttcgaagtggcctttgaggggctacagcggtcaagccgccac
aaatcggggatcgccatgcgttttccccgcatcaatcggctgcgctgggacaaacccacc
gccgaggcagatcggctggaaacactggaggcgatgcttcccgcgacggcctga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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