KEGG   Parvularcula bermudensis: PB2503_03037
Entry
PB2503_03037      CDS       T01298                                 
Name
(GenBank) helicase, UvrD/Rep family protein
  KO
K16898  ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
Organism
pbr  Parvularcula bermudensis
Brite
KEGG Orthology (KO) [BR:pbr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbr03400]
    PB2503_03037
Enzymes [BR:pbr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PB2503_03037
DNA repair and recombination proteins [BR:pbr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    AddAB pathway proteins
     PB2503_03037
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PDDEXK_1 UvrD_C_2 AAA_30 DUF4258
Other DBs
NCBI-ProteinID: ADM08684
UniProt: E0TD25
Position
complement(541380..544880)
AA seq 1166 aa
MGRDGWVGGWRGGGMTNSALDPLAETTAIQQTVSDPRRSAWLSANAGSGKTHVLIGRVIR
LLTDLADGGREIDPSSILCLTFTNAAAAEMKNRLFDILGEWSLLSDEALSDALTTRFGRS
PAAPSLMRTRRLFARALDTPGGLRVQTIHAFCESLLRQFPLEAGVMPGFSVLDDAEYAAL
IHRCRWQALRALQAEGFAGDHLTVQEKFSQESAVMKALAGIEASDLMPTEDLIEQLGEGG
DSDVDDIKRHCLQTLDREFVRQFSRIAPDIAKGAKERTFRAREALSAWEADDPSAFDHLC
SAFLKADGQRPADKTMAGNKDIRGILPSVAAEWAELATALEAARHRITACAIIRTHAATE
RLLRRTTDFCRAEKARRGLLDYDDLVASAASLLTRTDHAWLQFKLSHGLHHLLVDETQDT
GPSQWSVLNPLRQALLAHNGEVPKTVFFVGDRKQSIYAFQGADADLFERERAETETLASR
DHFVSRQLFLSFRSSQAILDVVDESFTPEEARRGLSDDAPIRHVAAKPDLPGKVELWPLE
RRDETLTEDPWSAPVDAVRPEHPTRKLAKRLAADIKKRVGRDDCILKNGDKRPLAYRDIL
LLCQTRGPIFHEVLRALSEAAIPTAGADRLPLMEDIAVRDLLSALRFAVNHEDDLSLAEL
LKSPLVGIDDDLLFALAHGRDQGVTLWSRVREAAGSDDRLAAAVAMIEEAEGTGHASGPF
ALLSSYLDGGQPSGWLRFHRRLGLGVDLALEELLTDAIAFEQAEPRSLVGFVHYLERSLS
DGRIIKRDSEDTEDVVRVMTVHGAKGREAHTVYLIDANKPSELKADFIKGDGGKLICPPS
GVSHPLLDLAKEKAKAREREEYRRRLYVGMTRAEQRLVITGTAGTSKDDPEAVAEAKPPA
EASWYGLVAQAMTRLGERVERQSSPGEAPLRVLSVASSRDRRVQPDKARQSAASAIPNWL
FRAADREVEERTLAPSHAVDQDQGRSISTIGPLAMVEGQGARRRGILLHGLFERLPPLAP
AQRRPLGARYLACHGGDIPAEERARWLEEVLGILENEAFAEVFSPAAKTEMAIAGRLGNR
RISGQIDRLVLREEEVVFVDFKTHRPPPRRVEDVESATLSQMALYHMLLRQRFPGRRVTG
ALLWTYTAQLMPLPEAVLLSALEKAL
NT seq 3501 nt   +upstreamnt  +downstreamnt
atgggccgggatggatgggtcggcggatggcgggggggaggcatgacaaacagcgccctc
gaccccctcgccgaaaccaccgccatccaacagaccgtctccgatccgcggcgatcggct
tggttgtcggcgaatgcgggatccggtaaaacccatgtattgatcggtcgggtcatccgc
ctattgacggatttggccgatggggggcgggagattgatccctcttcgatcctctgcctc
accttcacgaatgcggcggcggcggagatgaagaaccgtttgttcgacattctcggcgaa
tggtcattgctctcggacgaagccctatccgacgctctcacgacgcgtttcggtcgatcc
cccgccgccccgtcattgatgcgaacccggcgtttgttcgcgcgggcgcttgataccccc
ggggggcttcgtgtccagacgatccacgccttttgtgagtccttgctgcggcaattcccg
cttgaagcgggggtgatgcccggtttttccgtccttgatgacgccgaatatgccgcgctt
atccatcgctgccgatggcaggcgctgcgcgctctccaggcggaggggtttgccggtgat
catttgacggtccaggaaaaatttagccaggaatcggctgtcatgaaggctcttgccggc
attgaggcctcggatcttatgcccacggaggacctgattgaacagctgggcgaagggggc
gacagcgatgtcgatgacatcaaacggcattgccttcagaccctcgatcgtgagtttgtc
aggcaattttcccgtatcgctccagatatcgcaaagggggcaaaggaaagaacattccgt
gcccgtgaagccttgtccgcgtgggaggcggatgacccgtcggctttcgaccatctttgt
agcgcttttttaaaagccgacggccagcgacccgctgacaagacgatggcagggaataag
gatatccgcggcatccttccttccgtcgcggcagagtgggccgaactcgccacggctttg
gaggcggcgcgtcaccggatcacggcatgcgcgatcatcagaacccacgcggcgaccgag
cgcctgcttcgccgtacgaccgatttttgtcgagcggagaaagcccggcgcggtctgctc
gattacgacgatttggtcgcttcggcggcatcgctcctgacccggaccgatcatgcatgg
cttcagttcaagctctcccatggtctgcatcatctgttggtcgacgaaacccaggatacg
gggccatctcaatggtccgttctcaacccccttcgccaggcgctgttggcgcataatggg
gaggtgccgaaaacggtcttcttcgttggggaccggaagcaatcgatatacgccttccaa
ggggcggatgctgatttgttcgagagggagcgggcggagacggagacactcgcgtcgcgc
gatcacttcgtcagtcggcaattatttctctccttccgatcgtcgcaggcaatactcgat
gtcgtcgatgagagcttcacccctgaggaggcccggcgcgggctatcggacgacgcgccc
attcgccatgttgccgccaagcccgatttgccgggaaaggtcgagttatggccccttgag
cgacgcgatgaaacgctgacggaggatccgtggagcgcaccggtggatgcggtgcggcct
gagcatccgacacggaaactggccaaacgccttgccgccgatatcaaaaagcgcgtgggg
cgtgatgattgtatcctcaaaaacggcgacaagcgtccgctcgcctatcgcgatattttg
cttctctgtcagacaagggggccgatattccacgaggtcttgcgcgctctcagcgaggcg
gcgatccccaccgctggggcggatcgcttgcctttgatggaagatattgccgtacgcgat
ctattgtcggccttacgatttgccgtcaatcatgaggatgatctcagtctcgcggaactg
ctgaaatcaccgttggtcgggatcgacgacgaccttctattcgctttggcccatggtcgg
gatcaaggcgtgacactctggtcccgggttcgggaggcggccggatcggatgatcgcctg
gcggcggcggtcgcgatgattgaggaggctgagggcacaggtcacgcatcgggcccattc
gctctgttgtcgtcctatctcgatgggggacagccctcggggtggctgagattccaccga
cgcttagggctcggcgtggatctggcgcttgaggaattattgaccgacgccattgccttt
gaacaagccgagccccgatccctggtcggctttgtgcactatctcgaacgcagtctctca
gatgggcggatcatcaaacgagattcagaagacaccgaggatgtcgtgcgggtcatgacg
gtccacggggcgaaggggcgggaggcccatacggtctatttgatcgatgcgaataaaccc
tccgagctcaaggcggactttatcaaaggggacggcggaaaattgatctgtccgccgagc
ggcgtcagccatcccttgcttgatctggccaaggaaaaggcaaaagcgcgggagcgggaa
gaatatcggcggcgcctctatgtcggtatgacccgtgccgaacagcgattggtcattaca
gggacggctggaacgagcaaggacgaccctgaagccgtggcggaggcaaagccccccgca
gaggcgagttggtacggtcttgtggcccaggccatgacgcggcttggtgagcgggttgag
agacaatcgtccccgggggaggcccccttgcgcgtcttgtcggtggcttcatcgcgggac
cggcgcgttcagccggacaaggcccgccaatcggcagcgtcggcaatacctaactggctc
ttccgcgccgccgatcgagaggtggaggagcgaacgctcgccccctcccatgcggtggac
caggaccaggggcgatcgatctccacaatcggtcccttggcgatggtggaggggcagggg
gcgcggcggcgcggcatcttgctacacggactattcgaacgtctgccccccctcgcgccg
gcccagcgccgccccctcggcgcccgctatctggcctgccatggcggcgatatccccgcg
gaggaaagggcgcgctggctggaggaggtcctggggatcttggagaatgaggccttcgcc
gaggtcttttcgccggcggcgaaaacagaaatggcgatcgccgggcgcctcggaaatagg
cgcatcagtgggcagattgatcgtctcgttcttcgcgaggaggaggtcgttttcgttgac
ttcaaaacccatcgtcccccccctcgccgggtggaggatgttgagtccgcgaccctcagt
cagatggcgctttaccacatgctcttgcggcaacgctttccaggtcgccgcgtcactggg
gccctcctctggacttacaccgcgcagctgatgccgttgcccgaagcggttctcttgtcg
gcattagaaaaggcgctctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (40)   

Download RDF
DBGET integrated database retrieval system