KEGG   Parvularcula bermudensis: PB2503_09004
Entry
PB2503_09004      CDS       T01298                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
pbr  Parvularcula bermudensis
Pathway
pbr03420  Nucleotide excision repair
pbr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pbr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PB2503_09004
   03430 Mismatch repair
    PB2503_09004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbr03400]
    PB2503_09004
Enzymes [BR:pbr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PB2503_09004
DNA repair and recombination proteins [BR:pbr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PB2503_09004
   MMR (mismatch excision repair)
    Other MMR factors
     PB2503_09004
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor AAA_30 Viral_helicase1 Exo70_N DUF3553
Other DBs
NCBI-ProteinID: ADM09854
UniProt: E0TCR5
Position
complement(1793666..1795993)
AA seq 775 aa
MASLTERALSGLTPTASDAPAYLEGLNPPQKEAVLTTEGPVLMLAGAGTGKTRALTTRLA
HLLISGRANPWDLLAVTFTNKAAREMRERVGVLVGDQVEGMRWMGTFHSVAALILRRHAE
LVGLTPAFTIIDTDDQIRLCKQVISAAGVDEKRWPGRGLAGVLDAWKNRGLRPEEVPKDD
AFQFADGRAIDLYTAYQERLRTFNAADFGDLLVHNLTIFRQETDILNAFRRRFRYIMVDE
YQDTNIAQYLWLRLLGTDDEGRSGGNICVVGDDDQSIYGWRGAEVENILRFEKDFQGAKV
IRLEQNYRSTGAILSAATHIISHNKDRLGKTLWTDADHGAAVTLRGVWDAPEEARVICDE
IEAAQVKGRSLSDIAILVRASFQMRAFEERLNTAGLPYKVVGGPRFYEREETRDALAYLR
LVRNPDDDLSFSRIINKPRRGFGDKTLTQLSQVARQMGASLSAAGAALLETNELKGKSRS
ALKEFLDNIARWRSAAADLAPGRLVETVLEESGYIAFWKASKTAQAQGKLENLKELVQAA
EEFETLEGYLDHVSLVAERSGDTGEGQVWLMTLHAAKGLEFPVVFLPGWEEDIFPSGRAI
NDNGQVGLEEERRLAYVGVTRARERCHISFAANRQVYGRWQSSLPSRFIDELPEKEIEVL
SEPGLYGVKAAELPAYSRFADIAADPERSYRTPGWQRAQRARGASTAPALEGAARLVASS
TPGSSPFALGDRVFHQKFGYGEVTALEGNKVDVAFEKAGQKKVIATFLQSADAAG
NT seq 2328 nt   +upstreamnt  +downstreamnt
atggcttccctcacagaacgggccctgtcgggtcttacccccaccgcctcggatgctccc
gcctatctggaggggctcaatcccccccagaaagaggctgtgctcaccaccgaggggccg
gtcttgatgctggccggagcgggaacggggaagacccgcgccctcaccactcggcttgcc
catctgttgatctctggccgagccaatccgtgggacctcctcgccgtgaccttcaccaat
aaggccgcccgagaaatgcgcgagcgcgttggggtcctggtcggtgatcaggtcgaaggg
atgcgatggatgggcacctttcactcggttgccgcgctcattctgcgccgccatgccgaa
cttgtcgggctgacccccgccttcacgatcatcgacacagacgatcagatccggctgtgc
aagcaagtgatctccgcggccggcgtggatgaaaagcgatggccggggcgtggccttgcc
ggcgttctcgacgcttggaagaaccgtgggctacgtccagaagaggtgcccaaggacgat
gccttccaatttgccgacggtcgtgccatcgatctatatactgcttatcaagaacggctt
cgaaccttcaatgccgcggatttcggcgatctcttagtccataacctgacgatttttcgt
caagagacggatattctcaacgcctttcgccgccgtttccgatacatcatggtcgatgaa
tatcaggacaccaatattgcccagtatctttggttgcgcctcttgggaaccgacgacgaa
ggacggagtggcgggaatatctgtgtggtcggtgacgatgaccagtcgatctatggctgg
cggggagccgaagtcgaaaatatcctccggttcgagaaggattttcaaggggccaaagtg
atccgccttgagcagaattatcggtccaccggcgccatattgtccgcagcgacccatata
attagccataacaaggatcggcttggtaagacattatggaccgatgccgaccacggggcg
gccgtgaccctgcgcggcgtatgggatgccccggaagaagcgcgcgtgatttgcgatgag
atcgaagcggcccaggtcaagggccgctccctctccgacattgccatactcgtccgggca
tcgttccaaatgcgcgcctttgaagaaaggttgaacaccgccggtctgccctacaaggtt
gttggcggtccgcgattctacgaacgcgaagagacacgcgacgccctcgcctatctgcgg
ctggtgcggaatcccgacgatgatctcagctttagccgtatcatcaacaagccacggcgc
ggctttggcgacaaaacgctgacccagctgtcgcaagtggcacgtcagatgggcgccagc
ctgtccgctgcgggcgcggcgctcctcgaaacgaatgaacttaaagggaaaagccgctcg
gctctgaaggagttcttggacaatatcgcccgctggcgcagcgcggcggcggatctggcg
ccagggcgccttgtcgagacggtgcttgaggaatccggctatatcgccttttggaaagcc
tccaagaccgcccaggcccaggggaagctggaaaatctcaaggaattggttcaggcggcg
gaggagtttgaaaccctcgaaggctatctcgaccatgtgagcctcgtggccgaacgcagt
ggcgacaccggcgaggggcaggtatggttgatgactctccacgccgcaaagggtcttgaa
tttccggtcgtcttcctgccgggatgggaggaggatatcttcccttcaggcagggcgatc
aacgataatggccaggtgggcctcgaggaagaacgacgcctggcctatgtcggcgtgacc
cgggcgcgggagagatgccatatcagctttgcggcgaatcgacaggtctatggccgttgg
cagtccagtctcccctcgcgcttcattgatgaactaccggagaaggaaatcgaggttctg
tccgagcccggtctctatggggtgaaagccgccgagctgcctgcctattcccgctttgca
gatatcgccgccgaccccgagcgcagctatcgcacccctggctggcagcgggcccaacgg
gcaagaggggccagcaccgccccagcccttgagggcgcagcgcgccttgtggcgtcgagc
acaccgggaagcagcccgtttgccctgggcgatcgggttttccatcaaaagttcggctat
ggcgaagtcacggcccttgaaggcaacaaggtggatgtcgccttcgaaaaagcagggcag
aaaaaagtgatcgcgacatttcttcaatcggcggacgcggcgggatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (39)   

Download RDF
DBGET integrated database retrieval system