KEGG   Pseudomonas corrugata: AXG94_02520
Entry
AXG94_02520       CDS       T04842                                 
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pcg  Pseudomonas corrugata
Pathway
pcg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pcg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AXG94_02520 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pcg03400]
    AXG94_02520 (ligD)
Enzymes [BR:pcg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AXG94_02520 (ligD)
DNA repair and recombination proteins [BR:pcg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AXG94_02520 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase Rotamase_2
Other DBs
NCBI-ProteinID: AOE60694
Position
complement(615888..618485)
AA seq 865 aa
MTSKNLDEYNRMRDFAATPEPAAKRTRKSKKTAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKSKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGMWIPQGDP
HEAYEKGRLKFELQGEKLAGLWNLVRTHMPGKQEQWFLIKHQDDAARPESEYDVVQAEPE
SVLSDRTIAPKRRGKAAAAKAVKQPDKAAKPKSSKKIAKTTLSGAVAVPIPETLKPELAT
LVESAPDGEWLYEIKFDGYRVMARIENGDVRLITRNGHDWTHKLPSQAEALAGLGLESAW
LDGEMVVVNEQGVPDFQALQNAFDAGSSGKIAYYLFDLPYLNGMDLRKVPVEQRRAALAA
VLEGSESPLLRFSDAFEETPEALLNSACRMQMEGLIGKRAGSAYVSRRSSDWIKLKCKNR
QEFVVVGFSDPKGARSAFGALLLGLHDADSGELCYAGKVGTGFNETTLKNIHQQLLPLET
KQAAVVNPPTGYEAKGVHWLKPTLLAEVAYAEMTKEGSVRHAVFHGLRSDKPAREITQER
PKTLDKPAQAGKKPVKSATKTKGTQIPAMDGKVRITHPDRVIDATSGTTKLQLAEYYAGV
AEFILPELYERPVALVRAPDGIAGELFFQKNPERLAIPGITSLDKALTGQPVMIINNAEA
LIGAVQMSTVELHTWNATTVDLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVLDELGLK
AFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAVSGPKNRVGRIFI
DYLRNGLGATTICAYAVRTREGLPVSVPIFRDEVAELKGANLWNVHNVHERLAEVGHEPW
ADLKKTRQSITADMRRRIGMKKTDK
NT seq 2598 nt   +upstreamnt  +downstreamnt
atgaccagcaagaaccttgatgaatacaaccgtatgcgtgatttcgccgccaccccggag
ccggcggcgaagcgcacgcgcaaatcgaagaaaaccgcccacgccttgcagttctgcatt
cagaaacacgatgcttcacgcctgcattacgacttccgcctggaactggacggcgcactg
aagagctgggcggtgcccaagggaccgagcctggaccccaagtccaagcgccttgccgtg
catgtcgaagatcacccattggattacgcaacattcgagggcagcattccggaaggtcat
tatggcgccggcgatgtcattgtctgggatcggggcatgtggattccccagggcgatccc
catgaggcctacgagaaaggccggctcaagttcgagctgcaaggcgagaagctggccggc
ctgtggaatctggtgcgtacgcacatgccgggcaagcaggaacagtggttcctgatcaaa
caccaggacgacgccgctcgtcctgagagtgaatacgacgtagtgcaggccgagccggag
agcgtgctcagcgatcgcaccatcgcacccaagcgccggggtaaagccgctgctgccaaa
gcggtgaagcagccggacaaagccgccaagcccaagtcatcgaaaaaaatcgcgaaaacc
accctcagcggcgcggtggccgtgccgattcccgagacactcaagccggagctggcgacc
ctggtggaaagcgcccccgacggcgaatggctctatgaaatcaaattcgacggctatcgg
gtcatggcccgtatcgagaacggtgacgttcgcctgattacccgcaacggccacgactgg
acccacaagttgcccagccaggccgaggccctggccgggctcgggcttgagtcggcctgg
ctcgacggagaaatggtggtggtcaacgaacagggcgtaccggatttccaggccctgcaa
aacgccttcgacgccggcagcagcggcaagatcgcttattacctgttcgacctgccttat
ctcaatggcatggacttgcgcaaagtaccggtagagcaacgccgggctgcattggcggca
gtgctggaaggcagtgagagtccgttgttgcgtttctccgatgccttcgaggaaaccccc
gaagcgttgctcaacagcgcttgccggatgcaaatggaagggctgatcggcaagcgcgcg
ggcagtgcctatgtgtcccggcgcagcagcgactggatcaagctcaaatgcaagaatcgc
caggagttcgtggtggtcggtttcagcgaccccaaaggcgcgcgcagtgctttcggtgca
ttgctgctggggttgcatgacgccgacagcggcgagctgtgctacgccggcaaggtcggc
accgggttcaacgagaccaccctcaagaacatccaccagcagttgctgcccctggagacg
aagcaagctgccgtggtgaatccgcccaccggctacgaagccaagggcgtgcactggctc
aagccgacgttgctggccgaagtggcgtatgccgagatgaccaaggaaggttcggtgcgc
cacgcggtgttccatggtttacgcagtgataaaccagccagggaaattactcaggagcgt
ccgaaaacgctggacaagcctgcacaagccggcaaaaaaccggtcaaatccgcgacgaaa
accaagggcactcaaatcccggcgatggatggcaaggtgcggatcacccatcctgaccgg
gtcatcgacgccaccagcggtaccaccaagctgcaactggccgaatattacgccggcgtt
gccgagttcattctgccggaactgtacgagcgtccggtagcactggttcgggcgccggac
gggatcgccggcgagctgtttttccagaagaatcccgagcgcctggcgatccccgggatt
accagcctggacaaggcactgaccgggcagccggtgatgatcatcaacaacgccgaagcc
ctcatcggtgcggtgcagatgagtacggtggagttgcacacctggaatgccaccaccgtg
gatctggacaagccggatcgcttcgtcctcgacctcgacccggacccggcgttgccttgg
aagagcatggtcgaagcgacccagctgaccttgtcggtgctcgatgaactgggcctcaag
gcattcctcaagaccagtggcggcaagggcatccatgtggtggtgccgctgacgcgcaaa
ctcggctgggacgaggtcaaggggttcagccacgccattgtcagccatatggcaaagctg
ctgccggatcgtttctctgcggtgtccgggccgaagaatcgggtagggcggatcttcatc
gactacctgcgcaatggcttgggcgccaccaccatctgcgcctacgccgtccggacccga
gaggggctgccggtgtcggtgcccatctttcgggatgaggtggcggagctcaagggggcg
aatctgtggaatgtacacaacgttcatgagcgtcttgcggaagtggggcacgagccttgg
gccgacctgaagaaaacccgccagagcatcacggccgatatgcgccggcgaatcggcatg
aagaaaacggataaatga

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