KEGG T03201: EY04

Pseudomonas chlororaphis PA23: EY04_08530

Entry

EY04_08530        CDS       T03201

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

pch Pseudomonas chlororaphis PA23

Pathway

pch03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:pch00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EY04_08530
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pch03019]
    EY04_08530
   03009 Ribosome biogenesis [BR:pch03009]
    EY04_08530
Enzymes [BR:pch01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     EY04_08530
Messenger RNA biogenesis [BR:pch03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EY04_08530
Ribosome biogenesis [BR:pch03009]
Prokaryotic type
  rRNA processing factors
   EY04_08530

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio S1 TcdA_TcdB

Other DBs

NCBI-ProteinID:

AIC18941

Position

complement(1895629..1898820)

AA seq 1063 aa
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEASINQSSYEIAAAAAEAEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAAPVAAPAAVAEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRNGR
QQSRNRNGRRDEERKPREERAPREERAPREAREERQPREVREAREEVQATAREERAPRPP
REERQPRPPREDRKPRGEREERVRELREPLDAAPAATAEERPARQPREERQPRPPREERQ
PRAEQAAAVAEEELLPNEEQLQEDGQENAEGDRPRRRSRGQRRRSNRRERQRDANGNVIE
GSEENSEEPSSADLAAGLAVTAAVASTVISAPAEAQAHEQAERATAAVQEAAPTVEAPVV
EATTAVEIPAAPAVEVAQAREEQREEQTAQPAVAAEQPAVVAEPVIEAPVAEAPAAEPAQ
EAPRAFERAAEAIVAEAPAPVAEVVADEPVVAEPVVAAPAAPVEAPAAEVAAPVVETAPV
SALTSTGRAPNDPREVRRRKREAERLQKEAELAAAAAAEAPVEAVVAAEPAPVVAEVVEA
APAAEPAIEQPAPAADEAPRSVEEVVEHKPKALEEEHEPKPLV

NT seq 3192 nt +upstreamnt +downstreamnt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccgtatcactcgcatcgaaccaagcctcgaggctgcctttgtcgatttc
ggctctgagcgccatggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaatatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggtcgttacctggtgctgatgccgaacaacccgcgtgccggcggtatctcccgtcgc
atcgaaggcgaagagcgcaatgaactgcgcgaagccctgaacggcctggtagcccctgcc
gacatgggcctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactctggaccgccatcaaagaagcctcgctggaccgcgca
gcgcctttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtc
ccgctgttcaaccgtttccagatcgaaagccagatcgaaaccgccttccagcgcgtcgtc
gaactgccttccggtggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcccgtgccaccaaaggcagcgacatcgaggaaaccgccctgcagaccaat
ctggaagcagcggaagaaatcgctcgccaactgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgcccgcgtccaggtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccatcccttggcgaaagcagcggcatcgtc
tgcccacgctgcaacggcaccggcatcatccgcgacgtcgaatcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcccaagtg
ccgattccggtcgcggccttcctgctcaacgaaaaacgcaattcgatcaccaagatcgaa
ctgcgcacccgtgctcgtatcgtcattctgccgaacgaccatctcgaaacgccgcacttc
gaagtccagcgtctgcgcgatgacagcccggaagccagcatcaaccagtccagctacgaa
atcgccgctgccgctgccgaagccgaagaagtccagccagccgccgcgacccgcaccctg
gttcgccaggaagccgccgtcaagactgctccagcccgcgccaacgcaccggttccaacc
gaagttgccgcagctcctgttgccgccccggccgccgttgccgagccaagcctgttcaag
ggcctggtgaagtccctggtcagcctgttcgccaccaaggaagagccagccgctccggtc
gtagttgaaaaaccggccaccgaacgtcctgcgcgcaacgaagaacgccgcaacggtcgc
cagcagagccgcaaccgtaacggtcgccgcgacgaagaacgcaagccacgcgaagaacgc
gcccctcgtgaagagcgcgcaccgcgcgaagcccgcgaagagcgtcagccacgtgaagtc
cgcgaggctcgcgaggaagtccaggccaccgctcgcgaagagcgcgcgccgcgtccgcca
cgggaagagcgtcaaccacgcccaccacgcgaagaccgcaagccacgtggcgagcgtgaa
gagcgtgtgcgtgaactgcgcgaaccgctggacgccgctcctgccgctaccgctgaagag
cgtccggctcgccagccacgcgaagagcgtcaaccgcgtccaccgcgtgaagagcgtcaa
ccacgtgccgaacaggccgctgccgtcgctgaagaagagctgctgccgaacgaagagcaa
ctgcaggaagacggccaggagaacgccgaaggcgatcgtccacgccgccgctcccgtggc
cagcgtcgtcgcagcaaccgtcgtgagcgccagcgtgacgccaacggcaatgtgatcgaa
ggttcggaagagaacagcgaagagccaagcagcgccgatctggccgcaggcctggcggta
accgccgccgttgccagcaccgtgatcagcgccccggccgaagcccaggctcacgagcag
gccgaacgtgccaccgctgccgtccaggaagccgcaccgaccgtcgaagcaccggtcgtc
gaggccaccactgcggtagagattccagcagcaccggctgttgaagtcgcccaggcccgt
gaagaacagcgtgaagaacagaccgcgcaacctgctgttgctgcagaacaacccgcagtg
gttgccgagccagtgatcgaagcgccagtcgcagaagcaccagcggcagagccagcccag
gaagcgcctcgtgccttcgagcgtgccgccgaggcgatcgttgccgaagcgcctgcgcca
gtcgcagaagtcgtggctgatgagcctgtagttgccgagcctgtggttgccgcaccggca
gcaccggttgaagcacctgccgccgaagtggctgcgccggttgtcgagaccgctccggtc
agcgccctgaccagcaccggtcgcgcaccaaacgacccacgtgaagtgcgtcgtcgcaag
cgcgaagccgagcgtctgcagaaggaagccgaactggctgccgctgccgccgctgaagct
ccggtagaagccgtagtggctgccgagcctgcgccggtggttgccgaggtggtcgaggct
gctcctgctgccgaaccggccatcgagcaacctgcccctgctgccgacgaagccccgcgc
tccgtcgaagaagtggtagagcacaagccaaaggccctggaagaagagcacgagcctaaa
cctctcgtctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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