KEGG   Pseudomonas chlororaphis PA23: EY04_25170
Entry
EY04_25170        CDS       T03201                                 
Name
(GenBank) exodeoxyribonuclease
  KO
K03601  exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Organism
pch  Pseudomonas chlororaphis PA23
Pathway
pch03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pch00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    EY04_25170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pch03400]
    EY04_25170
Enzymes [BR:pch01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.6  exodeoxyribonuclease VII
     EY04_25170
DNA repair and recombination proteins [BR:pch03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     EY04_25170
SSDB
Motif
Pfam: Exonuc_VII_L tRNA_anti_2 tRNA_anti-codon DUF2064 DUF4807
Other DBs
NCBI-ProteinID: AIC22087
UniProt: A0AA89Y684
Position
5553414..5554793
AA seq 459 aa
MIKDPFARLGLDREVLTVSQLNGRARVLLEDVFSNIWVEGEISNLARPASGHVYFTLKDS
GAQVRCALFRQNAARVRQALKDGLAVKVRGKVSLFEGRGDYQLILDTVEPAGDGALRLAF
DALKEKLSAEGLFSTERKVPLPAHPQRIGIISSPTGAVIRDIISVFRRRAPQVALTLIPT
AVQGREATAQIVRALKMADARGFDALILARGGGSLEDLWCFNEEAVARAVDACVTPIVSA
VGHETDVSISDFVADVRAPTPSAAAELLAPDSSDLRHRVESLHRRLVMRMRDRLLRDRLR
LEGMARRLRHPGERLRQQAQRLDDLDMRMRRAFERSLNTRRERLIRLETRLAGQHPGRQL
ALLRQRLDSLAERLPRAMREGLKSRRLQLQSQVQTLHVVSPLATLGRGYSILLDERGQAI
RSAAQTQPGQRLKARLGEGELQVRVEDNHLTPVTLSLLD
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgattaaagatccctttgcaagactcggcctggaccgcgaagtcctgaccgtcagccag
ctcaacggccgtgcgcgggtgttgctggaagacgtgttcagcaacatctgggtcgaaggc
gaaatctccaacctcgcccgcccggcgtccggccatgtgtatttcaccctcaaggacagc
ggtgcccaggtgcgctgcgcgctgtttcggcaaaatgccgcgcgggtgcgccaggcgctg
aaggacggcctggcggtcaaggtgcgcggcaaggtctcgctgttcgagggccgcggcgac
tatcagctgatcctcgatacggtcgaaccggccggcgacggcgccctgcgcctggccttc
gatgccctgaaggaaaagctcagtgccgaaggcctgttcagcaccgaacgcaaggtgccg
ctgcccgcccatccgcagcgcatcggcattatcagttcgccgacgggcgcggtgattcgc
gacatcatcagcgtgttccgtcgccgcgcaccgcaagtggccctgaccctgatcccgacc
gccgtgcaaggccgcgaggcgaccgcgcagatcgtccgtgccctgaaaatggccgatgcc
cggggcttcgacgcactgatcctggcccgtggcggcggttccctggaagacctctggtgc
ttcaacgaagaagccgtggcccgggcggtggatgcctgtgtcacgccaatcgtcagcgcc
gtgggtcatgaaaccgacgtatcgatcagcgacttcgtcgccgacgtgcgcgcaccaacg
ccctcggcagcggccgaattgctcgccccggactccagcgacctgcggcatcgggtcgaa
agcctgcatcgacgcctggtgatgcgcatgcgcgatcggctgctgcgcgatcgcctgcgc
ctggaaggcatggcccggcgcctgcgtcaccccggcgaacgcctgcgccagcaagcgcag
cgcctggacgacctggacatgcgcatgcgccgggcattcgagcgcagcctcaatacccgt
cgcgagcgcctgatccgcctggaaacccggcttgccggccagcaccccgggcggcaactg
gcgctgctgcggcaacgcctcgacagcctggccgaacgcctgccaagggccatgcgcgaa
ggcctgaaatcccgccgcctgcaactgcaaagccaggtgcagaccctgcacgtggtcagc
ccgctggccaccctcggccgtggctacagcatcctgttggacgaacgcggccaggccatt
cgcagcgccgcacagacccagccgggacagcgcctcaaggcccgccttggcgaaggcgaa
ctgcaggtccgggtcgaagacaatcacctgacgcctgtcaccctctctttactggattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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