KEGG   Pseudomonas cichorii: PCH70_28110
Entry
PCH70_28110       CDS       T03002                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
pci  Pseudomonas cichorii
Pathway
pci03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pci00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PCH70_28110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pci03019]
    PCH70_28110
   03400 DNA repair and recombination proteins [BR:pci03400]
    PCH70_28110
Enzymes [BR:pci01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PCH70_28110
Messenger RNA biogenesis [BR:pci03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PCH70_28110
DNA repair and recombination proteins [BR:pci03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PCH70_28110
SSDB
Motif
Pfam: UvrD-helicase DEAD AAA_19 Helicase_C ResIII UvrD_C AAA_11 BTB
Other DBs
NCBI-ProteinID: AHF67964
Position
complement(3355673..3360049)
AA seq 1458 aa
MVSPDQPKSLIFDLEVVPGKPNQPDRIFMVGAMRPDMQEELERKIDKDLPEALKALDRLG
QGASFVLGHNVINHDLPILQEQAAHLDLHQLPVIDTLRLSPLAFPQNPYHRLVKDYKLIR
DSLNSPLSDCRSTLTLFNDQRRAFENLNNKHQSELLCYQALLAPTPNSDLETFFASITGQ
EPRHLTELRSLIPELLRETDPALTRTSKVCSTRLSQLLQSDLMEESLRWPLAYALAWLRV
SGGNSVLAPWVRHQFPATGKLITELRDVPCGESHCGYCSTTHDPRHELRRYFAPIQDFRT
EPDGRSLQHDVVLAGMQGKHVLAILATGGGKSLCYQLLALNRFHRNGSLTVIISPLQSLM
KDQVDGLLARNVQCAATLNGLLTMPERAEVLEKIQLGDVGILLVSPEQFRNIAFRRAISQ
RQVGAWIFDEAHCLSKWGADFRPDYLYVSRFIKQFTGDGQLAAIGCFTATAKPDVLEDIE
QHFQEQLGITFKRFIGTHERTNLHFEVLPCTRSEKRHHTQALLEEELGGSEGGAVIFVSS
RKGAEELADFLIGHGWACKHFHAGLEPHDKKDIQDAFKDGELKIIVATNAFGMGVDKSDI
RLVVHADIPGSLENYLQEAGRAGRDQGQARCVLLYDAQDIENQFGMCEGSKLTLRDIQQI
LRKLRKESDRRKGSRLVITAGEVLMDEHVDTSFEAGERDAETKVVTAVSWLERGQFLKRE
ENQTQIFPASLKLTKEEADKRLTTAKLPDRRLEEFKAILSYLYEASVDERINTDALMALT
SLTSEEVTATLRQMEDLGILVNDSKLTLYVRHGVVFPSTQRLQTTLKLESALFDLLQELA
PEAEHGEWQDLNVPLLTSTLKTSTGNNDLIPLHVLRLLRSLAQDHDIESQQRSCFELRQI
TQDFLKLRIRGGCSWRGIQGLGERRRALAAVVLTFLIGKLPPGSRNKDLLVDTTFGELMS
LIDQDLELRSRIPEPQRRKAIEHVLLHLHKQDVLTLNHGMTVMRRAMTIEVEPEKRNEKY
LKDDYQRLDEHYREKRIQVHVMREYAEVGLGSMGEARGLVQHYFTLAKQEFIRRYFVGRE
EVLKLATSEESWRSIVERLSAAQRIIVSDDDDVNRLILAGPGSGKTRVIVHRIAYLLRVR
RVPARCIVALTFNRHAANEIKQRLLKLVGPDAFGVNVMTYHRMAMRLTGTRFERGETVEE
GRLAQVMEEAVELLEGKRQVEGEDDLREQLMRGYRYILVDEYQDIDDLQYRLVSALAGRK
AEEEGRLCILAVGDDDQNIYAWRDTNNRYIERFREEYSATKNYLVDNYRSSVCIIDAANR
VIGRNPDRLKKDHPIQIDTVRRALPKGGDWENLDTERAGRVLRLRIEAEGYARANLQAQA
AMAELQRLLSLDSEDWQGCAVLARTHQYLLPLQAWCEVHGVPYCLAADKEGVLPLTAQRG
FGQAVEILRAITEPLSAS
NT seq 4377 nt   +upstreamnt  +downstreamnt
atggtttcaccggatcaacccaaaagcctgatatttgacctggaagtcgtccccggcaaa
cccaatcaacctgaccgtatcttcatggtcggtgcgatgcgtcccgacatgcaagaagaa
ctcgagcgtaaaatcgacaaggacctgcccgaagccctcaaggcactggatcgcttaggg
cagggcgctagttttgtactcggccacaacgttatcaaccatgacttgccgatacttcaa
gagcaagccgcgcatcttgacttacaccagttgccggtgatcgacaccctgcgcctatcg
ccgttggcttttccgcagaacccttatcaccgcttggtcaaagactacaaactcattcgt
gacagcctcaactctccgctgtctgattgccgctcgaccctgacattgttcaatgaccag
cgtcgtgcgtttgaaaatctgaataataagcaccagtcagaactcctctgctaccaagcg
ttgctcgccccaacgccgaacagcgacctggagacgttcttcgcctcgatcactggtcag
gagcctagacatctcacagaattgcgcagtctgattcctgaactgctcagggaaaccgac
ccggcgttgacgcgtacttccaaagtttgcagtactcgactaagccagttgctacaaagc
gacctgatggaggaaagtctgcgttggccactggcctatgcgttggcctggctgcgcgtt
tcgggcggcaactcggttctggcaccctgggtgcgtcaccaatttcccgcaaccggtaaa
ttgattaccgagctgcgtgatgtaccctgcggagaaagccactgcggctactgcagcact
actcatgatccccgccacgagctcaggcgctacttcgctccaattcaggatttccggact
gaacctgacggccgctctttacagcatgatgtggtactggcgggtatgcagggcaagcac
gtgctcgcgattctcgcgactgggggcggaaaatccttgtgctaccagttactggccctg
aaccgctttcaccgcaacggcagtctgacagtcatcatttcgccgttgcagtcactgatg
aaggatcaagtcgacggccttcttgctcgcaacgtccagtgtgctgcgaccctgaatggc
ctgctgaccatgcctgaacgggccgaagtgctggagaagatccagttaggggacgtcggc
attctgctggtctcgcccgaacagtttcgcaacatagcttttcgtcgtgcgatctcccaa
cgtcaggtcggtgcctggatcttcgacgaagcgcattgcttatccaagtggggcgcagat
ttccggccggattacctttatgtctcgcgtttcatcaagcagttcacaggtgatggtcaa
ctcgcagcgatcggttgctttacggcaacagccaagcctgacgtgcttgaggatatcgag
cagcactttcaagaacagttgggcatcactttcaagcgtttcatcggtactcatgagcga
accaatctgcactttgaagtcttgccttgtacccgttcagaaaagcgtcaccatacccag
gcgttacttgaggaagagctaggcggtagtgagggcggcgcggtgatattcgtgtctagc
cgcaaaggtgccgaagaactcgcggattttttgatcggccacggttgggcctgcaagcat
tttcacgctgggcttgagccacacgacaagaaggacattcaggacgccttcaaggatggg
gaactgaagattatcgtggccaccaacgcttttggcatgggcgtagacaaatctgatatt
cgcctggtggtacatgctgatattccgggctcgctggagaactacttgcaggaagctggc
cgggctgggcgcgatcaaggacaggctcgatgcgttctcctgtatgacgcccaggatatc
gagaaccagttcgggatgtgcgaagggtcgaaactgactctgcgcgatattcagcagatc
ctgcgaaaactgcgcaaggagagcgaccgacgcaagggcagccggctggtcatcactgct
ggtgaagtattgatggacgaacacgtcgataccagttttgaggccggagagcgcgatgct
gaaaccaaggtggtcacggctgtatcctggctagagcgtgggcagtttttaaagcgggaa
gagaatcagacccaaatctttccggcaagcctgaagctgacgaaggaggaagccgataag
cgtctgaccaccgctaaactgccggacaggcggctggaagagttcaaggccattctgagt
tatttgtatgaagcgagtgttgatgagcgcatcaataccgacgccttaatggcgctcacc
agtctcacgtccgaagaggttactgcgacactgcgccagatggaggacttggggatttta
gtcaacgattctaagctcactttgtacgtccggcatggcgttgtatttccttcgacccaa
cgtctgcagactaccttgaagctcgaatctgccttgttcgacctgttacaggagttggct
ccggaggccgagcatggggagtggcaggaccttaacgtgcccctgttgacctcgacactc
aaaacatccaccggcaacaacgatctgataccgcttcatgtcctgcgactgctgcgtagt
ctggctcaagatcacgatatcgagagtcaacagcgtagttgtttcgagttgcgtcaaatc
actcaggattttctcaagcttcgtatccgtggagggtgcagctggagaggtattcaaggg
ttgggcgagcgccggcgtgccttggctgccgtagtacttacgtttttgattggcaaattg
ccgccaggctcacggaacaaggacctgttggtcgacaccacgttcggcgaacttatgagc
ctgattgatcaggatctagagttgcgctccagaatacccgagccgcagcgacgtaaagct
attgagcacgtactgctacacctgcacaaacaggacgtgcttacgttgaaccacggcatg
acagtcatgcgtcgcgctatgacgattgaagtcgagccggaaaaacgtaacgaaaaatac
cttaaggatgactaccagcgccttgatgagcattatcgagaaaaacgtattcaggttcac
gttatgcgtgagtatgccgaggttggactcgggtcgatgggagaggcccgtggcctcgtt
caacactatttcacgctagccaaacaggagtttattcgccgctactttgtaggtcgcgag
gaagtactcaagctagccacgagtgaggagtcctggcgtagcatcgtcgagaggctcagt
gctgcccaacggattatcgtatccgacgacgatgacgttaatcgtctgattctggcgggg
ccaggttctggcaagactcgtgtgatcgtgcaccgtatcgcttatctattgcgagttcga
cgtgtacctgcgcgctgcatcgtggctttgacctttaaccgtcacgcggccaatgagatc
aagcagcgcctgctcaagttggttggtcccgatgcctttggggtcaacgtgatgacttat
caccggatggcaatgcgtctgacggggactcgcttcgagcgaggtgaaacagtcgaggaa
gggcgccttgctcaagtgatggaagaagctgttgagctgcttgagggcaagcgtcaggta
gaaggcgaggacgatctacgcgagcaacttatgcgaggctaccgttacatccttgtcgac
gaataccaagatattgacgaccttcagtatcgcctcgtgagtgcattggccggacgcaag
gccgaagaagaagggcgtttgtgcattctggcagtcggtgacgatgatcagaatatttat
gcctggcgtgatacgaataatcgctacatagagcgctttcgcgaggaatactcagctaca
aagaactatctggtcgacaactaccgctccagcgtctgcatcatcgatgcggccaacagg
gtcattggtcgcaaccccgatcgcctcaaaaaggatcacccgatccagatcgatactgtt
cgtcgtgcactgccgaaaggcggcgactgggaaaacctggacaccgaacgggctggtcgc
gtgcttcgtcttagaatagaggctgagggctacgctcgagcgaatctgcaggcccaggct
gcgatggcggagctgcagcgtctgctcagtctggatagcgaggattggcaagggtgtgct
gtgctagcccgcacccaccagtacctgttgccccttcaggcctggtgtgaagttcacggt
gttccatattgtcttgcagccgataaggaaggtgttttgcctctgaccgctcaacgcggc
ttcggacaggctgttgaaatactacgagcaattaccgagccgctgagtgcttcctag

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