KEGG T00483: Pcal

Pyrobaculum calidifontis: Pcal_0039

Entry

Pcal_0039 CDS T00483

Definition

ATP-dependent DNA ligase

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

pcl Pyrobaculum calidifontis

Pathway

pcl03030	DNA replication
pcl03410	Base excision repair
pcl03420	Nucleotide excision repair
pcl03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:pcl03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:pcl03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pcl03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pcl03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 HECT

Other DBs

NCBI-GI:

126458667

NCBI-GeneID:

4908550

UniProt:

A3MS62

Position

complement(42958..44709)

AA seq 583 aa
MQFGELAKVLAAVESTTQRTTMVKLLTSLFKKAKPEEIDKIVYFILGDLRPPWEGVELGV
AEKLCIRAISKATGLSAAELEGWYKKSGDVGEVARRALAAGKRPTLLAFAQQKPLEVAEV
YDTLLKVAKAAGEGAQDLKVSLLSSLFSRASPEEAKYIARFVVGKLRLGVADMTLIEALS
EAFGVSKEGLERAYHVYPDLGRLARHVAEGRPLEEIKITPGVPVLPMLAQRLSSASEILA
KLGGTAICEYKYDGERAQIHLREGSVKIFSRRLEDITHAYPDVAKAVKEAVKAREAILEG
EIVAVDPDTGEMLPFQELMHRKRKHDVAEAMEAYPAVLYLFDLLYVDGEDLTTQPLIYRR
LRLSEVVEEGGDVYIAKWGMFDGAEDVDLFFHEAVSLGTEGLICKSPTSTYEMGARGWNW
IKYKRDYRSEMIDTVDLVVVGAFHGRGKRAGLYGAFLLAAYDPSTDMFYTVCKVGSGFTD
ADLRRMYDMLQPLKIPHRHPRVVSKMQPDVWFVPQVVIEVIGAEITLSPLHTCCIGAVKP
GVGLAIRFPRFTGRYRTDKRPEDATTTKELVEMYQRQKKVPTT

NT seq 1752 nt +upstreamnt +downstreamnt
atgcaattcggcgagttggccaaggtcttagctgccgtggagagcacgacgcagcggacc
accatggtgaagctactcacctcgctctttaaaaaggccaaaccggaggagatcgataaa
attgtatacttcatcctgggcgatttgagacccccctgggagggggtagagctgggtgtg
gccgagaagctctgcatccgcgccatctcaaaggccaccggcctctcggccgcggagctc
gaggggtggtacaagaagagcggagacgtgggcgaagtcgcgaggagagccctggcggcg
ggcaagaggcccactctcctggccttcgcccagcagaagccgctggaggtggccgaggtt
tacgacaccttgctcaaggtggccaaggccgcgggagagggggcccaggacttgaaggtg
tctctcctctcctcgctcttctcccgcgcctcgcccgaggaggccaagtacatcgcccga
tttgtagttgggaagctcaggctgggagtagccgacatgactctcatagaggccctctcc
gaggccttcggcgtgtctaaggaggggcttgagagagcttaccacgtctaccccgaccta
ggccgcctggcgagacatgtggcagaggggaggccgctggaggagataaaaatcacgccg
ggggtccctgttctccccatgctagcccagcgcctctcctcggcgtcggagatcttggcg
aagctaggcggcacggccatctgcgagtacaaatacgacggggagagggcccagatacac
ctaagagagggctcggtgaaaatattcagcaggaggcttgaggacattacccacgcatac
cccgacgtggccaaggccgtgaaagaggcggtcaaggcgagggaggccatactggagggc
gaaattgtggcagtggacccagacaccggggagatgttgccattccaagagcttatgcac
cggaagcggaaacacgacgtggctgaggcaatggaggcctaccccgcagtcctctacctc
ttcgacctcttgtacgtagacggggaggatttaaccacccagcccctcatctacaggagg
ctacgcctatccgaggtagtagaggaggggggagacgtctacatagccaagtggggaatg
ttcgacggcgcggaggatgtggacttgttcttccacgaggccgtctccctgggcacagag
ggcctcatctgcaaatcccccacttccacatacgagatgggggccaggggctggaactgg
attaagtacaagagagactacagaagcgaaatgatagacacagtagacctagtggtagtg
ggcgctttccacggcagaggaaaaagggcaggcctctacggggcgtttctgctggcggcc
tacgacccctcaaccgacatgttttacacagtgtgcaaagtcggtagcggattcacagac
gcagacctccgcaggatgtacgacatgctccagcccctcaaaataccccacagacatcca
agagtagtctccaaaatgcagccagacgtctggttcgtgccccaggtggtgatagaggtg
ataggcgcagagatcaccctctcacccctccacacgtgttgtataggcgcggtgaagccc
ggcgtggggctcgccattagattcccacgattcaccggccgctacaggacagacaaaagg
ccagaagacgccacaaccacaaaagagctcgtggaaatgtaccaacgccaaaagaaagta
ccaaccacctaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

Download RDF

DBGET integrated database retrieval system