KEGG   Pyrobaculum calidifontis: Pcal_0866
Entry
Pcal_0866         CDS       T00483                                 
Name
(GenBank) Wyosine base formation
  KO
K15449  tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
Organism
pcl  Pyrobaculum calidifontis
Brite
KEGG Orthology (KO) [BR:pcl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pcl03016]
    Pcal_0866
Enzymes [BR:pcl01000]
 4. Lyases
  4.1  Carbon-carbon lyases
   4.1.3  Oxo-acid-lyases
    4.1.3.44  tRNA 4-demethylwyosine synthase (AdoMet-dependent)
     Pcal_0866
Transfer RNA biogenesis [BR:pcl03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    Pcal_0866
SSDB
Motif
Pfam: Wyosine_form Radical_SAM Carla_C4
Other DBs
NCBI-ProteinID: ABO08292
UniProt: A3MUH5
Position
complement(825158..826300)
AA seq 380 aa
MCCAVPLDKLIYRERGLPVSCEVEPIGRYHVLEGPRIKIRASAGRALVERHYGFVGHAAV
ELCKWTREAIEGGKSCYKVKFYNAPAGGSHRCVEMSPVGLVCSNRCVYCWRPTEEFDAFV
LDERFYLEPEEIVRGVLKERVRLLSGYWGHPEGKRRVKEALAPTHWAISLSGEPTMYPKL
PELIKLIKSLPETKSVFLVTNGQHPEMIKRLWEEDALPTQLYLSTNAPNKELYYRVNVPV
YNREDAWEKWLQSLDLLAVVPTRTVMRITLIRSLNYDERYIPQFAELVKRGNPHFVEVKS
YMHLGHSTFRLKREDMLSHEEVKAWAYKLLEELRRIGADFVYMDDDEPSRIVVLQNMKRY
VDRWIVPPASGNGSAPRSSK
NT seq 1143 nt   +upstreamnt  +downstreamnt
atgtgttgcgctgttcctttggacaagcttatatatagagaacggggcttacctgtgtcc
tgcgaagttgagcccattggccgctaccacgtgttggaggggccgcggattaagattagg
gcatctgccggcagggcgctcgtggagcggcactacggctttgtgggccacgccgccgtg
gagctctgtaagtggactagggaggccatcgaggggggcaagtcttgctacaaggtgaag
ttctacaacgcgccggcggggggctcccaccgctgtgtagagatgagccccgtggggctt
gtatgtagcaaccgttgtgtctactgctggcgccccacggaggagttcgacgcctttgtc
ctcgacgagaggttctacctagagcccgaggagatcgtgaggggggtgttgaaggagagg
gtgcgcctcttgtcggggtactggggccaccccgaggggaagagacgcgtcaaggaggcg
ctggcgcctacccactgggctatttccctctcgggggagcccactatgtacccaaagttg
ccagagttgataaagctgataaagtcgctccccgagaccaagtccgtattccttgtcaca
aacggccagcacccagagatgattaagcggctttgggaagaggacgccctccccacgcag
ctctacctctccactaacgcccccaacaaggagctgtactacagggtgaacgtccccgtg
tacaacagggaggacgcctgggagaagtggctccagtcgcttgacctactcgcagtggtg
cccacgaggaccgtcatgaggattactctgataaggagcttgaactacgacgagaggtac
atcccgcagttcgccgagcttgtcaagaggggcaacccccacttcgtcgaggtaaagagc
tacatgcacctaggccactccaccttcaggctgaagagggaggacatgttgagccacgag
gaggtcaaggcttgggcatacaagctcttggaggagctgaggaggataggcgccgacttt
gtctacatggacgacgacgagcccagccgtatcgtcgtcttgcagaacatgaagaggtat
gtagaccgctggattgtgcccccggctagtggcaacggctctgccccacgtagttcaaaa
tag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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