KEGG   Phanerochaete carnosa: PHACADRAFT_160215
Entry
PHACADRAFT_160215 CDS       T03128                                 
Name
(RefSeq) hypothetical protein
  KO
K14328  regulator of nonsense transcripts 3
Organism
pco  Phanerochaete carnosa
Pathway
pco03013  Nucleocytoplasmic transport
pco03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pco00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    PHACADRAFT_160215
   03015 mRNA surveillance pathway
    PHACADRAFT_160215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pco03019]
    PHACADRAFT_160215
Messenger RNA biogenesis [BR:pco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     PHACADRAFT_160215
   mRNA cycle factors
    P-body specific factors
     PHACADRAFT_160215
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 18909156
NCBI-ProteinID: XP_007394533
JGI: Phaca1_160215
UniProt: K5V2E2
Position
Unknown
AA seq 475 aa
MATVESSKASSSKSKSKEPKETKEPKEKERKARSSKQSHAERLKTVVRRLPPNLPEDVFW
QSVQRWVSDETVIWKEYHQGKFKKRLNKENIPSRAYIAFKDEETLATFSREYDGHVFRDK
ADEDYISFLESLKEPASKPFDVDIIETLVASTQAPAQPTTTPLLEALKAEKSAQKDKEAI
LRAHAHYKEIAANPSKASKKEEAKQKAAAAKTEAASQKAAPQVKPAEGQPSKKAAKKAAK
AAAQAQAKDANPPAAAKKGKDKEKDKDKEKKLEKEKEPQPAPTILKNQAQRTSEPSEAGT
SKPPPTTPKAPRSQASASASAPANPPPPVPPLAPSAQTAGSEPLASTPAPAAASRQRTRP
VIGLASRQFEAALSGVVGGRPRREREKDKESGPSTPVSAVPGTSASEASSPKPKQQAAAA
GAPTILQRDPQPASGVGAKQGQSAAESESGAPQRDESAGRGKGRGRGRGRGRGGA
NT seq 1428 nt   +upstreamnt  +downstreamnt
atggcgaccgttgaatccagcaaagcttcttcaagcaagagcaagagcaaggaaccaaaa
gagacgaaggagccaaaggagaaggaacgcaaggcgcgctcgtcgaagcagtcgcacgcc
gaacggctcaagaccgtcgtgcgcaggctgccaccgaacctcccagaggacgtcttctgg
cagagcgtgcagaggtgggtctcggacgagaccgtcatttggaaggagtaccaccagggc
aaattcaagaaacggctgaacaaggaaaacattccgtcgcgggcgtacattgcattcaag
gatgaggagacgcttgctactttcagtagggagtatgacggacatgtatttcgggataag
gctgacgaagattacatctcgtttttggagtcgctgaaggagccagcgtccaagcccttc
gacgtggatatcatcgaaacactagttgccagcacgcaggccccagcccagcccacaact
acgcccctacttgaagctctcaaagctgagaagtctgcgcagaaagacaaggaagcgatt
ctccgcgcacatgcacactacaaggagattgcggcgaacccctctaaagcgtccaagaaa
gaagaagccaagcagaaagcggccgcagccaaaactgaagctgcctctcagaaggcggcg
ccacaagtaaagcccgcagaaggccagcctagcaagaaagctgcgaagaaggccgctaaa
gctgccgcacaggcgcaagcgaaggatgccaacccgcccgcagcagcgaagaaggggaag
gataaagagaaggataaggacaaagaaaaaaaattagaaaaggagaaggaacctcagcct
gcacccacgatactgaagaatcaggcgcaacgcacgtccgagccgagcgaagcggggacg
tcgaagccaccaccgacgacgcccaaagcaccccgaagccaggcgtccgcgtccgcgtcc
gcacccgcgaatccgcctcctcctgtccccccgcttgcaccctccgcgcagactgcaggc
tcagagccactcgcctctaccccagcacccgctgcggcctcccgacagcgtacgcgacct
gtcattgggctcgcgtcccggcagttcgaggcagcgctgagcggcgtggtgggcggtcgg
ccgaggcgtgagcgcgagaaggacaaggagtcgggcccgtcgacgcctgtctctgccgtt
cccggcacgtcagcgtcagaggcgagctcgcccaagccgaagcagcaggcggcggctgca
ggcgctccgacgatattgcagcgagacccgcagccggcgtctggggttggtgctaaacaa
gggcagtcagcggcagagagcgagagtggtgcgcctcagagggacgagagcgctggtcgc
gggaagggaagaggaaggggcagagggcgtggccgaggaggtgcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (60)   

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