KEGG   Phanerochaete carnosa: PHACADRAFT_160812
Entry
PHACADRAFT_160812 CDS       T03128                                 
Name
(RefSeq) hypothetical protein
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
pco  Phanerochaete carnosa
Pathway
pco03020  RNA polymerase
pco03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PHACADRAFT_160812
  09124 Replication and repair
   03420 Nucleotide excision repair
    PHACADRAFT_160812
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pco03021]
    PHACADRAFT_160812
   03400 DNA repair and recombination proteins [BR:pco03400]
    PHACADRAFT_160812
Transcription machinery [BR:pco03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     PHACADRAFT_160812
DNA repair and recombination proteins [BR:pco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PHACADRAFT_160812
SSDB
Motif
Pfam: TFIIS_C RNA_POL_M_15KD GFA zf-ACC Zn_Tnp_IS1 Lar_restr_allev C1_1 zf-ISL3 Cys_rich_KTR zf-RRN7
Other DBs
NCBI-GeneID: 18909173
NCBI-ProteinID: XP_007395130
JGI: Phaca1_160812
UniProt: K5W0I9
Position
Unknown
AA seq 124 aa
MASLHFCSECNNLLYPKADPDRRIMVYACRICDFDEPGENKLVYRNDLLTVTKEQVGVTH
DLPTDTTLAHAKMVCPKCGNDDAVYFQDQSKRRETRMILFYVCTKCNHSYLDPTLPTDSR
PDIE
NT seq 375 nt   +upstreamnt  +downstreamnt
atggcttcattacacttctgttcggaatgcaacaacctgctctatcccaaggccgacccc
gaccgccgcatcatggtctatgcatgtcgtatctgcgactttgatgagccaggagagaac
aagctagtctaccgcaatgacttacttacagtcacaaaggagcaagtcggtgtcacgcac
gacctcccaacagatacaacgcttgcgcacgcgaagatggtttgcccaaaatgtgggaat
gacgatgctgtctatttccaagaccagtcgaagcgaagagaaactcggatgatactcttc
tacgtctgcacaaaatgcaatcacagctacctcgatccaacgctacctacagatagcaga
cctgatatagaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (28)   

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