KEGG   Paracoccus contaminans: B0A89_10545
Entry
B0A89_10545       CDS       T04876                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pcon  Paracoccus contaminans
Pathway
pcon03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pcon00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    B0A89_10545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pcon03400]
    B0A89_10545
Enzymes [BR:pcon01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B0A89_10545
DNA repair and recombination proteins [BR:pcon03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     B0A89_10545
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: ARJ70001
UniProt: A0A1W6CYQ8
Position
2223013..2225487
AA seq 824 aa
MSPLKSRAPGGPPARRADLSRLAAYRARRDPGATPEPFDAGAPSAGALRYSMQNHDATRL
HWDLRLERDGVLLSWAVTRGPSLDPAEKRLAVRTEDHPIPYLTFEGVIPRGQYGAGTVML
WDLGHWRPLDDAGRGLAKGHLRFQLYGRRLTGLWDLVRIRGRPSEKRENWLLVKAEDDAA
RRPDPVARHRVSVSTGRSLDQIAAGDGPVPSGPASPLKLPDPVEPMLASLVDSPPEGEGW
LHEVKIDGYRGMVHLGKGGPVIRTRNGLDWTARFAALVPALAELPARSALIDGEIVAGAG
AQGFSALQQAITDGGPFGYIAFDLLDLDGRSLRNRPLTERRAALERLLADAPPLGLVQLS
VALPGKGADAMAAVCAAGGEGIVSKRADAVYRSGRADSWRKAKCERRTAFAVIGWTRSDS
PGRPFGALLLASAEGQGWRYRGRVGTGFSAQAQAELAARMAPLTRGTAPAQVPRAQSRGV
TWIEPALMAEIRYAEPTADGILRHASFQGLREDKMPPLPPSSPAPVIRIAPGGQGGRVIE
GIAVTSPDRVIFPGCGVTKGDLAAYYAAAAPLMLAHCADRPLALLRLPEGLAGERFFQKH
AGRGFPAQMRTTPIPGEDEPAIYVNTAAGLVAGAQMGVVEYHIRGIRRDRADRPDRLVFD
LDPDEGLDFSQVRAAAIDLRDRLADLGLPTWPMLTGGKGIHVVADLRRTVGWDTVKLFAR
AFAHLLAAEQPGRYVAVMSKARREGRIFIDWLRNDAQATAVSAFSCRAREGATVAMPLSW
DALDRTDGANAYDIRTALQAAPGIAPDRRRPVSLEPAARALAGG
NT seq 2475 nt   +upstreamnt  +downstreamnt
atgagcccgctgaaaagccgcgcaccaggcgggccacccgcaaggcgggctgacttgtcg
cgccttgccgcctatcgcgcccgccgcgatccgggggcgacacccgagccgttcgatgcg
ggcgcgccttcggcgggggcgctgcgctattcgatgcagaaccatgacgcgacgcggctg
cactgggatctgcgccttgaacgggatggcgtgctgctgagctgggcggtcacgcgcggc
ccctcgctcgacccggcagaaaagcggctggcggtgcgcaccgaggaccatccgatcccc
tacctgaccttcgagggcgtgatcccccggggccaatacggcgcgggcaccgtgatgctg
tgggatctgggccattggcggccgcttgatgatgcgggccggggccttgccaaggggcat
ctgcgctttcagctttacggccggcggctgaccggcctgtgggatctggtgcggatcagg
ggcaggccgtccgaaaagcgcgagaactggctgctggtcaaggccgaggatgacgccgcc
cgccgccccgatccggtggcccgtcatcgcgtcagcgtttcgaccggccgcagccttgac
cagatcgcggcgggcgatgggccggtgccgtccggccccgccagcccgctgaagctgcca
gatccggtcgagccgatgctggccagtctggtcgacagcccgcccgagggcgagggctgg
ctgcacgaagtcaagatcgacggctatcgcggcatggtccatctgggcaagggcgggccg
gtgatccgcacccgcaacgggctggactggacggcccgcttcgcggcgctggtgccggcg
ctggccgaactgcccgcgcgctcggccctgatcgacggggaaatcgtcgcgggcgcgggc
gcgcagggattttccgcattgcagcaggcgatcaccgatggcggccccttcggctatatc
gcgttcgacctgctggatctggatgggcgcagcctgcgcaatcgcccgctgacagaacgg
cgcgccgcgctggaacggcttctggccgatgccccgccgctggggctggtgcagctttcc
gtggcgctgcccggcaagggcgcggatgcgatggcggcggtctgcgccgcagggggcgag
gggattgtgtccaaacgtgccgatgcggtctatcgcagcggcagggccgacagttggcgc
aaggccaaatgcgagcgtcggaccgcctttgccgtgatcggatggacgaggtcggacagc
cccggccggcccttcggtgcgctgctgctggccagcgccgaggggcagggctggcgctat
cgcggccgggtgggcaccggcttttcggcgcaagcgcaggcagagctggccgcccgcatg
gcgccgctgacgcgcgggacggcgcccgcgcaggtgccgcgcgcgcagtcgcggggcgtg
acatggatcgagccggcgctgatggccgagatccgctatgccgagccaaccgccgatggc
atcctgcgccatgccagctttcagggcctgcgcgaggacaagatgccccccctgccgccg
tcctctccagcccccgtcatccgcattgcgcccggcggccagggcgggcgggtgatcgaa
gggatcgccgtcaccagccccgaccgggtgatctttcccggctgcggcgtgaccaagggc
gatctggccgcctattacgccgctgcggcgcccctgatgctggcccattgcgccgatcgc
ccgctggcgctgctgcgcctgcccgaggggctggcgggcgagcggttctttcagaaacat
gccggacgcggctttcccgcgcagatgaggaccacccccattccgggcgaggatgaacct
gccatctatgtcaacaccgctgccgggctggttgcgggggcgcagatgggcgtcgtggaa
tatcatatccgcggcatccggcgtgaccgggcggaccgccccgaccggctggtgttcgac
ctggaccctgacgaggggctggatttttcccaagttcgcgccgcggcgatcgacctgcgc
gaccggcttgccgatctgggcctgccgacctggccgatgctgaccggcggcaagggcatc
catgtcgtcgccgatctgcggcgcaccgttggctgggacacggtcaagctgttcgcccgc
gcctttgcccatctgctggcggccgagcagccgggccgctatgtcgcggtcatgtccaag
gcccggcgcgaaggcaggatcttcatcgactggctgaggaatgatgcgcaggccactgca
gtttcggccttttcctgccgggcgcgcgaaggggcgacggtggcgatgccgctgtcctgg
gatgcgctggatcgcaccgatggggcgaatgcctatgatatccgaaccgccctgcaggct
gcgccagggatcgcgcctgatcgcaggcggcccgtatcgctcgagcctgcggcccgcgcc
cttgcggggggctga

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