KEGG   Pseudomonas chlororaphis subsp. aurantiaca: JM49_15950
Entry
JM49_15950        CDS       T03338                                 
Name
(GenBank) DNA repair protein
  KO
K10979  DNA end-binding protein Ku
Organism
pcp  Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pcp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    JM49_15950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pcp03400]
    JM49_15950
DNA repair and recombination proteins [BR:pcp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     JM49_15950
SSDB
Motif
Pfam: Ku HD_4
Other DBs
NCBI-ProteinID: AIS13094
Position
3497110..3497973
AA seq 287 aa
MARAIWKGAISFGLVHIPVALVSATSSQGVDFDWLDQRTMDPVGYKRINKVTGKEVTKEH
IVKGVAYEKGRYVLLSEDEIRSAHPLSTQTIDIFAFVDSQQIPLQNIDTPYFLAPDKRGG
KVYALLRETLQSTSKVALALVVLHTRQHLAALMPLESALVLVMLRWPAEVRSLDELALGP
EVTHPDLAKGERDMAKRLVADMSTDWQPEEYRDSFTDKIMALVEKKAQAGKIEDVESSTG
EEQRKSADVIDLTEMLKRSLGSRSRSKAPASPDKPGKTRKTTKSSRA
NT seq 864 nt   +upstreamnt  +downstreamnt
atggcacgggcaatctggaaaggcgcgatcagtttcggcctggttcatattccggtggcg
ctggtctcggcgacctcttcccagggcgtcgacttcgactggctggaccagcgcaccatg
gacccggtgggttacaagcggatcaacaaggtcaccggcaaggaagtcaccaaggaacac
atagtcaagggcgtggcgtacgagaaaggccgctatgtgctgctcagcgaggacgagatc
cgctcggcccacccgctgtcgacccagaccatcgacatcttcgccttcgtcgacagccag
cagatcccgctgcagaacatcgacaccccctacttcctggctccggacaagcgtggcggc
aaggtctatgcgctgctgcgcgaaaccctgcagagcacctcgaaagtcgccctggccctg
gtggtgctgcacacccgccagcatctggcggcgctgatgccgctggagtcggcgctggtg
ctggtaatgctgcgctggccggccgaggtgcgcagcctcgacgaactggccctggggccg
gaggtgactcaccctgacctggccaagggcgaacgggacatggccaagcgcctggtggcg
gacatgagcaccgattggcagccggaggaataccgcgacagcttcaccgacaaaatcatg
gccctggtggaaaaaaaggcccaggccggcaagatcgaggacgtggaaagcagcaccggt
gaagagcaacgcaagagcgccgatgtcatcgacctgaccgagatgctcaagcgcagcctg
ggaagcagatccaggagcaaggcgcccgccagcccggacaaacccggcaagaccaggaaa
accacgaaaagctcccgcgcctga

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