KEGG   Plasmodium cynomolgi: PCYB_042010
Entry
PCYB_042010       CDS       T02490                                 
Name
(RefSeq) eIF-4A-like DEAD family RNA helicase
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
pcy  Plasmodium cynomolgi
Pathway
pcy03013  Nucleocytoplasmic transport
pcy03015  mRNA surveillance pathway
pcy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PCYB_042010
  09122 Translation
   03013 Nucleocytoplasmic transport
    PCYB_042010
   03015 mRNA surveillance pathway
    PCYB_042010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcy03019]
    PCYB_042010
   03041 Spliceosome [BR:pcy03041]
    PCYB_042010
Enzymes [BR:pcy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PCYB_042010
Messenger RNA biogenesis [BR:pcy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     PCYB_042010
Spliceosome [BR:pcy03041]
 Complex C
  Other components
   EJC/TREX
    PCYB_042010
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PCYB_042010
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 14695837
NCBI-ProteinID: XP_004225400
UniProt: K6UQC1
Position
4:431377..433039
AA seq 472 aa
MATMDHSVQDELVDYEDDENILDAKDVKGNLDSSLLNNNSKGVNENGAMRGSYATVHTGG
FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ
LETNDGKDIKEEKEMNNTTSNNIGGDLTNGNGAPKNKFVRCLGLAHTRELAYQIKNEFDR
FSKYLKGVRCEVVYGGIAMSKHIKMFKEESVPHIIIGTPGRILALIREKYLLTEKIQHFV
LDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDE
AKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPS
IAIHGGLDQQERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPENSDSYLHR
VGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYINQ
NT seq 1419 nt   +upstreamnt  +downstreamnt
atggccaccatggaccacagcgtgcaggacgaactcgtggactacgaagacgatgaaaac
atattagatgctaaggacgttaagggcaatttggacagtagtcttttaaacaacaacagc
aagggggtgaatgaaaatggggccatgcgaggcagctatgccacggtgcacacgggaggg
tttaaggatttttttttgaagccagagttgcttagggccataagcgagagcggcttcgag
cacccctcggaggtgcagcaggagaccatccccgcggccatcacgggcacggacatcctc
tgccaggcgaagagtggaatgggtaaaacggccgtgtttgtgctgtccatcctgcagcag
ctggagacgaacgacggaaaggatataaaggaagagaaggaaatgaacaacaccacgagc
aacaacatcggaggagacctaaccaacggcaatggagcacccaaaaataaattcgtcaga
tgcctcggactggcacacacacgagagttagcctaccaaatcaaaaacgaattcgatcga
tttagtaaatatctaaaaggggtccgatgtgaagtcgtttatggaggaatcgcaatgagc
aagcacataaaaatgttcaaggaggaaagcgtcccccatatcattataggaaccccagga
cgtatcctggcactcataagagaaaaatatttattaacagaaaaaatccaacattttgtt
ttggatgagtgtgataaatgtttggaaaaattggacatgagaagtgacgtgcagaagatt
tttatttccactcctttaaagaaacaggtgatgtttttttcagccaccatggcaaaagaa
atgagagatgtgtgcaaaaaatttttacaaaatcctgtggagatttttattgatgatgaa
gctaagttgaagttgcacggattgctacaacactatgtgaagttacaagaaaaggacaaa
acgagaaagctaattgaaattttggacgccttagaatttaaccaagttattatttttgta
aaatctgtcactagggctatcaccttggataaattactgaccgaatgcaacttcccttcc
attgccatccatggtggccttgaccaacaggagagaattgaacgatacgataagtttaaa
aagtttgaaaatcgaatattagtctccacagatttgtttggcagaggtattgacatagag
cgagtaaacattgtcattaactatgacatgcctgaaaattcagattcttatctccacaga
gtcggtcgagctggtcgatttggtaccaagggactcgccgttacgttcgtttcttctcaa
gaggatactttagctttgaatgaggtccagaccaggtttgaagttgccatttcggaaatg
cccaacaagatcgactgcaatgagtacatcaaccagtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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