KEGG   Plasmodium cynomolgi: PCYB_071720
Entry
PCYB_071720       CDS       T02490                                 
Name
(RefSeq) exoribonuclease
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pcy  Plasmodium cynomolgi
Pathway
pcy03008  Ribosome biogenesis in eukaryotes
pcy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcy00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    PCYB_071720
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PCYB_071720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcy03021]
    PCYB_071720
   03019 Messenger RNA biogenesis [BR:pcy03019]
    PCYB_071720
   03009 Ribosome biogenesis [BR:pcy03009]
    PCYB_071720
   03016 Transfer RNA biogenesis [BR:pcy03016]
    PCYB_071720
Transcription machinery [BR:pcy03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     PCYB_071720
Messenger RNA biogenesis [BR:pcy03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     PCYB_071720
Ribosome biogenesis [BR:pcy03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    PCYB_071720
Transfer RNA biogenesis [BR:pcy03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    PCYB_071720
SSDB
Motif
Pfam: XRN_M XRN_N SRI
Other DBs
NCBI-GeneID: 14692018
NCBI-ProteinID: XP_004221617
UniProt: K6UU42
Position
7:367365..371396
AA seq 1327 aa
MGVPTFYRWLVTRYPKIAKATYETRDSDVYARRTKIRDGHHNGEKKKDTYRVPDLSDYVN
NTDENHCSDNINGYYDNLYLDMNGIIHLCSHSDNSRRAKSNEEIFLNIFLYIERLFDIIE
PKKLLYMAIDGVAPKAKMNQQRSRRFKSILCSEIERNAYIELREKFLSENRTVPEELTFW
DSNIITPGTQFMYELSVALKYFVEHKITNDEKWKNIVVIFSDANRSQPGYDPNTRHVIHG
MDADLIMLSLASHEPYFYILREIIILDSKGEEKVQNKDFVGVLKSKQDLPLCTTHIRKTK
KMYTKYNDPHYANINRSHNCMINSENWNELQILDLTILREYLSKDFFFDSTYNLERCIDD
FIFICFLCGNDFLPHLPSISIAAGSIDQLVLLYQKVLPVLGDYLINEGKINLKPFSKYVS
FIAEVERETFISQYDFKKKREKRDQQKDSLKRVKCTDEQNDGSGNIAAMLTDGAKNSRDY
DSVGGETGNSNRGSLQFNDVNMKRGSNQSDAMVMGTQTGTASASSLASAASPPAPLNKKM
LYESKIQSMQPIRNFKFKEKKGEKSINFLVRPASSSISEQVPNNEPSTLQSVIEEEAPAS
GEASQCKAQLNGEAPQCKEQLNGEAAQCKEQLNGEAAQPGGPPPKGDLQWDIEDEETKRI
NDINEFNMLLKEAIKKANECENPKEDVELGGDENPELIRIKYYKSKFHLDESDHVDDFVK
EVVYKYIEGLSWVLLYYFQSCPMWHWYYPYYYAPLSSDLIIDNVNFIFHKDEPILPLEQL
LCVLPSNSSHCLPKSYQELMVRYDSPIIDFYPKTFKEEENGKKYKYQWVILLPFVDKERI
IKHARELNDTLTEEERKRNRRGMNKIYMNCSHSLSKQITKSIKAYVKKMKGEGEKKNDAD
MSSTGNLNANSPAGNTIEGGEPLALSEGPTNVEEAAEQQQKGDGNNSGNTYDQFFKNMNL
SIPISNNRDMNLFGYLNCKHEDSDVNILKKIFKFSSNFSTTCNSAFFVQPELIKHRSSLL
PNHRRPRKVLTVVDINNEERKLRFNAPAAKRMILNSLSTNHPHIYSYAKGSQPKSYVVNY
GSGGYGGGGYGSGNYGGGGYGGGGYGGGGYGGYGSGNYGGGGYGNANYGGHVGRDHRSNY
SSANYSSHMSAPKNHASYHHGPNYQSHQNHQAYQNQNQNPSYGNSYAPPIYKNVAMHKGP
KNATAAHTYDSKKESNYNNAYDSSYASHRNPPSRENPNYDAPYNTSHSARYKSENRGGYG
THGGHTHGNYKHQSGYGNHGNHNSSHNSEVNQHKRDTFKSSAQNGVPGINKKANYNGRSV
PYKDREY
NT seq 3984 nt   +upstreamnt  +downstreamnt
atgggagtacccaccttctaccgatggctggttacaaggtacccaaaaatagccaaagca
acctacgagacgagagacagcgatgtgtacgctaggagaacgaagattcgggatggacat
cataatggggagaaaaagaaggacacgtatagagtaccagacctgagcgattatgtaaac
aacacagatgaaaaccattgctcagacaacataaatggctactatgataatttgtatctc
gacatgaacggaataatccacctgtgctcacatagtgacaatagcaggagagccaaaagt
aatgaagaaatatttttaaatatcttcttgtacatagaacgtctgtttgatataatcgaa
ccaaagaaactgctctacatggccattgacggagtagctcctaaggctaaaatgaaccag
cagagaagtcgaaggtttaagtctatcctctgctcagaaattgaaagaaatgcatatatc
gaattgagggaaaaatttttatcagaaaatcgaacagttcctgaggaactcaccttctgg
gacagtaacattataaccccagggactcagttcatgtatgaattatcagttgctttgaaa
tatttcgtggagcataaaattacaaatgatgagaaatggaaaaacattgtggtgattttt
tctgatgctaatagatctcaacctgggtacgatcctaatacgagacatgtaatccacggg
atggacgctgacttaatcatgttatcgctagctagccatgaaccatatttttacatttta
agagaaataattatcctagattcgaaaggagaagagaaggttcaaaataaagactttgta
ggcgtgctcaaaagtaagcaggatttacctctctgtaccacacacataagaaaaacgaaa
aaaatgtataccaaatataatgacccacattatgctaacataaacagaagtcataattgt
atgattaatagtgaaaactggaacgaattgcagatattggacttaaccattttgagggaa
tacctatcgaaagatttctttttcgattctacttacaacttggaaagatgtattgacgat
tttatttttatctgttttctgtgtggaaatgactttttaccacatttaccttccatttcg
attgctgcggggagcatagatcagctagttttactataccagaaggtgctgcccgtgttg
ggggactacctaattaacgaggggaagattaatttaaagcccttttccaaatatgtttcc
ttcattgctgaggtcgaaagggaaacgttcatttcgcagtacgattttaagaagaagaga
gaaaaaagggaccagcaaaaggactccctaaagagggttaagtgcactgatgagcaaaat
gatggttcaggtaacatcgctgcgatgctgacagatggtgcaaaaaatagtagagattat
gatagtgtgggaggggaaactggaaattctaatagaggaagtctacagtttaatgacgtt
aacatgaagaggggcagcaatcagagtgacgccatggtaatgggaacccaaacagggaca
gcatcagcaagctcgctagcctctgcagcatcgcctcccgcaccattgaataagaaaatg
ctgtacgagtccaaaatacagagcatgcagccgatcaggaatttcaagtttaaggaaaag
aagggtgagaagagtatcaacttcctcgttcgccccgcgtcgtcttccatttcggagcag
gtgcccaacaacgaaccgtcgactttgcagagcgtgatcgaggaggaagcccctgcatcg
ggggaggcatcacaatgtaaggcgcagctcaacggggaggcaccacaatgcaaggagcag
ctcaacggggaggcagcacaatgcaaggagcagctcaacggggaggcagcacaaccaggg
ggccctcccccgaaaggagacctccaatgggacatagaagacgaggaaaccaaacgaatc
aacgatattaacgagtttaacatgctccttaaggaggcaatcaaaaaggcaaatgagtgt
gaaaatcccaaagaggatgtagaacttgggggggatgaaaacccagaacttatcagaata
aagtactacaagtccaagttccatttggacgagagcgaccatgtagacgatttcgtcaaa
gaagtagtatacaaatatattgaggggttgtcctgggttcttttatattatttccaatcg
tgtcccatgtggcattggtattatccatactattatgcacccctgtcatcagacttaatt
attgacaatgtgaattttatcttccataaggacgaaccgattcttccccttgagcaacta
ctctgtgtgttgccatcgaattctagtcactgcttacctaagagttaccaagaattaatg
gtccgatatgattcccccattattgatttttacccaaaaacttttaaggaggaagaaaat
gggaagaagtacaaatatcagtgggttatcctactgccttttgtagacaaggagagaatt
atcaaacatgctagagagctgaatgacaccttgactgaagaagagaggaagaggaatcgt
aggggaatgaacaaaatttatatgaactgttcacactctctttcgaagcaaattaccaag
tcgataaaagcatacgtgaagaaaatgaagggggagggtgagaagaaaaacgatgctgat
atgagtagcacaggtaatttgaatgcgaattctcccgctgggaataccatcgaggggggg
gaaccccttgcccttagcgaaggaccaaccaacgtggaagaagcagccgagcagcaacag
aaaggggacggtaacaacagcggaaacacatacgatcagttttttaagaacatgaactta
agtatcccgataagtaacaaccgagacatgaatctgtttggctatctcaattgtaaacac
gaagacagtgacgttaacattttaaagaaaatttttaaattttcgtcgaatttttccacc
acgtgtaatagcgctttctttgtccagcccgaacttataaagcatcgctcttcgcttttg
ccaaaccataggagaccaaggaaggtgctcaccgtggttgacatcaacaacgaggagagg
aaactcaggttcaatgcacccgcggcgaagaggatgatcttgaacagcctaagtaccaac
cacccacatatttactcctacgcgaaggggagtcagccgaaaagttatgtcgtaaattac
ggcagcggaggttacgggggaggcggctatggaagtggtaactacggaggaggtggttac
gggggaggcggttacgggggaggcggctacggaggctacggaagtggtaactacggagga
ggcggctacggcaacgccaattacgggggccacgttggccgggaccaccgaagcaactac
tccagcgcgaattacagctcgcacatgagtgcccccaagaaccacgcttcctaccaccac
ggcccgaattatcagagccaccaaaatcatcaggcctatcaaaatcaaaatcaaaatccc
agttacggcaacagttacgcgccaccgatctacaaaaacgtggccatgcacaagggccca
aaaaatgcaaccgcggcgcacacgtacgacagcaaaaaggagagcaactataacaacgcc
tacgacagtagctatgcatcccatagaaacccgcccagcagggagaatccgaactatgac
gcgccctacaacacttcccacagtgcgaggtacaagagcgagaaccgcggcgggtacggg
actcacggagggcacactcatggcaattacaaacaccaaagcgggtacggaaaccatggc
aaccataacagcagccataacagcgaagtcaaccagcacaagcgagacaccttcaaaagc
agcgcgcaaaacggcgtgccagggattaacaagaaggccaattacaacggtagatccgtg
ccgtacaaggacagggaatactga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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