KEGG   Phoenix dactylifera (date palm): 103707006
Entry
103707006         CDS       T03274                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103707006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pda03019]
    103707006
   03009 Ribosome biogenesis [BR:pda03009]
    103707006
   04131 Membrane trafficking [BR:pda04131]
    103707006
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pda04147]
    103707006
Messenger RNA biogenesis [BR:pda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     103707006
Ribosome biogenesis [BR:pda03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    103707006
Membrane trafficking [BR:pda04131]
 SNARE
  SNARE associated proteins
   Others
    103707006
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    103707006
Exosome [BR:pda04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   103707006
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_2 AAA_5 AAA_22 AAA_14 AAA_33 TIP49 AAA_18 RNA_helicase AAA_17 AAA_28 nSTAND3 Mg_chelatase ATPase_2 Parvo_NS1 IstB_IS21 Viral_helicase1 Zeta_toxin NACHT ABC_tran AAA_7 Vps4_C AAA_24 NB-ARC DUF815 TsaE Sigma54_activat ResIII Sigma54_activ_2 Rad17 ATP-synt_ab UFD1 Zot
Other DBs
NCBI-GeneID: 103707006
NCBI-ProteinID: XP_008789550
UniProt: A0A8B7C198
Position
18:1631936..1638876
AA seq 810 aa
MANQGEAASSDSKGTKRDFSTAILERKKAANRLIVDEAVNDDNSVVSLHPETMEKLQLFR
GDTILLKGKKRKDTICIALADDACEEPKIRMNKVVRSNLRVRLGDVVSVHQCQDVKYGKR
VHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEY
CVVAPDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG
VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAE
KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID
PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLLEDVDLERIAKDTHGYVGADLAAL
CTEAALQCIREKMDIIDLEDESIDAEILNSMAVTNEHFKTALGTSNPSALRETVVEVPNV
SWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE
CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAG
GAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRY
QIFKACLRKSPVAKEVDLGALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERKRS
ENPEAMEEDDADEVAEIKAVHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
STESDTGAGTIGSDPFATSGAGADEDDLYN
NT seq 2433 nt   +upstreamnt  +downstreamnt
atggcgaatcagggcgaggccgcctcttccgattccaagggcacgaagagggatttcagt
actgcgattcttgagaggaagaaggccgcgaatcgattgatcgtggacgaggctgtcaat
gacgacaattcggtggtctctttgcacccagagacgatggaaaagctgcagcttttccgt
ggcgatacgatcctgctgaagggcaagaaaaggaaagatactatttgcatcgcacttgct
gatgatgcgtgtgaagagcctaagataaggatgaacaaagttgttagatcaaatctcagg
gttaggcttggtgatgttgtttctgtccatcagtgccaggatgtgaagtacgggaagcgt
gtccatattcttcccatagatgataccattgaaggtgttacagggaacttgtttgatgca
tatttgaagccatattttctggaggcatatcgccctgtaaggaaaggggatctttttctt
gttagaggtggaatgcgaagtgtagaatttaaggttatagaaaccgacccacccgagtat
tgtgttgttgctccagacacagagatcttctgtgagggggaacctgtgaaaagagaggat
gaggaaagacttaatgaggtaggatacgatgatgtgggtggtgtccgaaagcagatggct
cagattcgagaattagttgagcttccactaaggcaccctcaacttttcaagtctattggt
gtaaaaccaccaaaaggaatcttgctgtatgggcctcctggttctgggaagacactcata
gcccgagctgttgcaaatgagactggagcatttttcttctgtatcaatggccctgaaatt
atgtcaaaactagctggagaaagtgaaagcaatcttaggaaggcttttgaagaagctgaa
aaaaatgcaccatcaattatttttattgatgagattgactccattgctcctaagagggag
aaaacccatggagaagttgagaggcgtattgtttctcagctcttgactttgatggatggt
ttgaaatctcgtgcgcatgtaattgtcatcggtgctaccaatcggcccaacagtatcgac
ccagctctcagaaggtttgggaggtttgatagggaaattgacattggtgtgccagatgaa
gttggacgtctggaagttcttcgcatccatacaaagaacatgaagcttcttgaagatgtt
gatttggaaagaattgccaaggacacgcatgggtatgtcggggctgatctggctgctttg
tgcacagaagctgctcttcagtgcatacgggagaaaatggacatcattgacttagaagat
gaaagcatagatgctgagatactgaactctatggctgtcaccaatgaacatttcaagact
gctcttggaaccagtaatccgtctgcactccgagaaacagttgttgaagtgcccaatgtc
agctgggatgatattggtggtctcgagaatgtcaagagggaactgcaggagactgttcaa
tatccagttgaacatcctgagaagttcgaaaaatttggcatgtcaccttcgaagggagtc
ctgttctatggacctcctggttgtgggaaaaccttgttagccaaggcaattgctaatgaa
tgccaagcaaactttatcagtgtcaagggtcctgaacttttgactatgtggtttggtgag
agtgaagcgaatgttcgagaaatctttgacaaggctcgccagtctgcaccatgcgtcctc
ttttttgatgagcttgattccattgctactcagagagggagcagtgttggagatgcagga
ggcgctgctgatagggttctcaatcagctgttgacagagatggacggcatgtctgccaag
aaaactgtttttatcatcggggcaaccaacaggcctgacatcatagatccagcattgctc
aggccaggccgtcttgaccagttaatttatatccccctcccagacgaagcctctcgttac
cagatatttaaagcttgcctaaggaagtcccctgttgcaaaagaggtggacctgggggct
cttgccaagtacactcaaggctttagtggggcagatattactgagatttgccaacgggct
tgcaaatatgctattagagaaaacattgagaaggatattgaaagggagaggaagaggagc
gaaaatccagaggctatggaggaagatgatgctgatgaagttgcagagatcaaagctgtt
cacttcgaagagtcaatgaagtttgcccgaaggagtgtcagtgatgctgacatacggaaa
taccaggcttttgcgcaaactttgcagcaatcgaggggctttggaagcgaattccgcttc
tcaactgagtcggacacaggtgctgggactattggatctgatccatttgctacgtcaggt
gctggcgctgatgaggatgatctatacaattaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (38)   
   Pfam (38)   
All databases (72)   

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