KEGG   Phoenix dactylifera (date palm): 103708153
Entry
103708153         CDS       T03274                                 
Name
(RefSeq) histone deacetylase 6 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03082  ATP-dependent chromatin remodeling
pda03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103708153
   03083 Polycomb repressive complex
    103708153
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pda03036]
    103708153
Enzymes [BR:pda01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     103708153
Chromosome and associated proteins [BR:pda03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     103708153
   HDAC complexes
    Sin3A-HDAC complex
     103708153
    BRAF-HDAC complex
     103708153
    REST complex
     103708153
    SHIP complex
     103708153
    MiDAC complex
     103708153
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     103708153
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103708153
  Chromatin remodeling factors
   NuRD complex
    103708153
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 103708153
NCBI-ProteinID: XP_008791160
UniProt: A0A8B7C409
Position
4:17692041..17699902
AA seq 485 aa
MPMPTAMSMSGSRGPFGEGEGASLPASSGADAKKRRVTYFYEPTIGDYYYGQGHPMKPHR
IRMAHNLVVHYSLHHLMEVCRPFPASADDIRRFHSDDYVDFLSALVSPAPAPAPADPRLL
KRFNVGEDCPVFDGLFEFCQASAGGSIGAAVKINRGDADIAINWAGGLHHAKKCEASGFC
YVNDIVLGILELLKFHRRVLYVDIDVHHGDGVEEAFFTTDRVMTVSFHKYGDFFPGTGHI
KDNGFGKGKYYALNVPLNDGTDDDSFRGLFRPIIQKVMEVYQPDAVVLQCGADSLAGDRL
GCFNLSVKGHADCLRYLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYN
EYYEYFGPDYNLHIEPKNIENQNSPQDLETMRNVLLEHLSKIQHVPSVQFQARPPDAETP
EEEDEDMDRRPQRQLWSGECYDSEPEEGKRPQHGHSSLSDISAAHSDNMFQGQKLVHDAG
PAIKI
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgcccatgccgacggccatgtccatgtccggatcccgagggccgtttggggagggggag
ggggcgtcgctgccggcgtcgtcgggagcggacgcgaagaagcggcgggtgacctacttc
tacgagccgacaatcggggactactactacggacaggggcacccgatgaagccccaccgc
atccggatggcccacaatctggtcgtgcactactccctccaccacctcatggaggtctgc
cgccccttccccgcctccgccgacgacatccgccgcttccactccgatgactatgtcgac
ttcctctccgccctcgtctcccccgcccccgcccccgcccccgccgacccccgcctcctg
aagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctcttcgagttctgccag
gcctccgctggcggttccatcggcgccgccgtcaagatcaaccgcggcgacgccgacatc
gccatcaactgggctggcggtcttcatcacgccaagaagtgcgaggcctccggcttctgc
tacgtcaacgacatcgtcctcggcatcctcgagctcctcaagttccacaggcgtgtactc
tatgtagacattgatgtccatcatggagatggtgttgaagaggcttttttcacaactgat
agagtcatgactgtctcattccacaaatatggggacttctttcctgggacagggcatatc
aaggacaatggttttgggaaaggaaagtactatgctttgaatgttcctttgaatgatggc
acagatgatgatagcttccgtggactatttaggccaatcattcaaaaagtaatggaggtt
tatcagcctgatgcagtggttctccagtgtggtgcagattccttggctggagataggcta
ggttgcttcaacttgtcagtgaaggggcatgcagattgtctacgatatctcagatctttt
aatgtacctctgatggtattgggtggtggaggttatactattaggaatgttgctcgctgc
tggtgctatgagacagctgttgcagttggagtggaacctgataataagttgccgtacaat
gaatattatgagtactttggtcctgactataatcttcatattgaaccaaaaaacatagag
aatcagaactctccacaagatctcgagacaatgaggaatgttttgttggagcacctttcg
aagatacagcatgttccaagtgtacagtttcaggccagacctccagatgcagaaactcct
gaggaggaagatgaggatatggatcgcaggccgcaacgtcaactatggagtggtgaatgt
tatgattctgaaccagaagagggcaaaaggcctcaacatggacattctagcttaagcgat
atatctgcagcgcactctgataatatgtttcaggggcaaaaacttgttcatgatgcagga
ccggctataaaaatttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (1)   
   Pfam (1)   
All databases (27)   

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