KEGG   Phoenix dactylifera (date palm): 103709691
Entry
103709691         CDS       T03274                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103709691
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pda03019]
    103709691
Messenger RNA biogenesis [BR:pda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103709691
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103709691
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 103709691
NCBI-ProteinID: XP_008793379
UniProt: A0A8B7C7G8
Position
13:complement(8216458..8226605)
AA seq 660 aa
MSGLLNSTLNGSTSNLPDSTGRPFTSSFSAQSATSPGFHHSGGLQGLHNIHGNFNIPNMP
SSLASRNAAMTGVPSSGVQQPGGNISSGRFASNNIPVALSQISHGSGITNRGGINVVGSP
AFSSSMNGVGGSIPGIPSSSAAAGNRSSVPGLGVSPILGSVGPRITSSMGNMVGGGNMGR
SISSGGLSVPGLASRVNFAANSGSGNLNVQGPNRLMGGMLQQAPQMLGMLGNSYPTSGGP
LSQSQVQGGNNALNSMGMLSDVNSNDNSPFDMNDFPQLTGRPSSAGGPQGQLGSMRKQGV
GVSSIVQQSQEFSIQNEDFPALPGFKGGSSDYSVDLHQKEQLHENVPMMQSQHFSMARSS
GFSLGGTYPSNRQQQQQHAGAVSSAGVTYAHGSNQDLIHLHGSDLFPSSHGTYHSQMQNS
GPPSIGFRPLSSPNAASSMGAYEQLIQQYQHPQNQSQFRLQQMSAVNQSYRDQSLKSVQG
IQSAPDRFGLLGLLSVIRMNDPDLTSLALGIDLTTLGLNLNSSDNLHKTFGSPWSDEPAK
GEPEYCIPTCYYAKQPPSLQQGHFSRFHLLTLFYIFYSMPRDEAQLYAASELYSRGWFYH
KEHQLWFTRANVEPLVKTQTYERGTYVCFDPNTWETRTKENFVLQYEAVEKKPTLPSARP
NT seq 1983 nt   +upstreamnt  +downstreamnt
atgtccgggttgcttaattcaacacttaatggttcaacatcaaatctccctgactcgact
ggcaggcctttcacatcttctttttctgctcagtctgcgacatctccaggttttcatcac
tctggtggtctgcaagggctacacaacattcacggaaacttcaacattcccaacatgccg
agctcactcgcatctaggaatgcggcaatgacgggtgtcccatcaagtggtgttcagcaa
cctggaggaaacatatctagtggacgattcgcgtcaaacaatataccagttgctttgtct
cagatttctcatggttctgggataaccaatagagggggcattaatgttgtaggaagccct
gcttttagtagtagtatgaatggggttggtggttcaatacctgggattccctcaagttct
gctgctgctggcaaccgtagttctgttcctgggttgggtgtatctccaattttggggagt
gtaggtcctcgaataacaagctcgatgggaaacatggttggtggaggtaacatgggaaga
agcataagctctggaggattatctgttcctggcctcgcttctcgtgtaaattttgctgct
aatagtggatcagggaatcttaatgtacagggacccaacaggttgatgggtggcatgctt
caacaagcacctcaaatgctcggtatgcttggaaactcttatcctacatctggaggacca
ttatctcagagtcaagtacaaggagggaataatgcattaaactctatgggaatgttaagt
gatgtcaactccaatgataattctccttttgacatgaatgattttcctcaattgactggg
agaccaagttcagctggagggccacaaggacaattgggttcaatgcgcaagcaaggagtt
ggtgttagctccattgtccaacaaagtcaggaatttagcatccaaaatgaagattttcca
gctttgcctggatttaaaggtggcagctcagattattctgtcgatctgcatcaaaaggaa
cagcttcatgagaatgttccgatgatgcagtcacagcacttcagtatggcaagatcttct
ggatttagcttagggggaacttacccatctaaccggcagcaacagcagcagcatgctgga
gcagtcagcagtgctggtgttacatatgcgcatggaagcaatcaagatcttatccatcta
catggctctgatctgtttccatcttctcatggaacctatcactcccagatgcaaaatagt
gggccacctagcattggatttagaccattaagttccccaaatgcagcttctagtatggga
gcatatgaacagctcattcagcaatatcaacacccacagaatcaatctcaatttcgactg
caacagatgtctgctgttaatcaatcttacagagatcagagtctgaagtccgtgcagggg
atacagagtgctcctgatcggtttggcttattgggtttgttaagtgttattaggatgaac
gatccagatctgacatcacttgctttgggaattgatttgacaacattagggttgaatttg
aactcatcagataatcttcataagacatttggatctccatggtctgatgaaccagccaaa
ggagagccagagtactgcattcccacctgttattatgccaaacaaccaccttcactacag
caaggacatttttcgcggtttcatctattaacactgttttacatcttttacagcatgcca
agagatgaagctcaactgtatgctgcttctgaactatattcacgagggtggttctaccat
aaagagcaccaattatggttcacgagagcaaacgtggagcctctggttaagactcagacg
tatgaacggggaacctatgtctgtttcgatccaaacacatgggaaactagaactaaggaa
aattttgttctccaatatgaggcggtggagaagaagccaactcttccttctgcgcgccct
taa

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