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Database: PDB
Entry: 2DBY
LinkDB: 2DBY
Original site: 2DBY 
HEADER    HYDROLASE                               16-DEC-05   2DBY              
TITLE     CRYSTAL STRUCTURE OF THE GTP-BINDING PROTEIN YCHF IN COMPLEXED WITH   
TITLE    2 GDP                                                                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: GTP-BINDING PROTEIN;                                       
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: GTP-BINDING PROTEIN YCHF;                                   
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS;                           
SOURCE   3 ORGANISM_TAXID: 300852;                                              
SOURCE   4 STRAIN: HB8;                                                         
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PET11B                                    
KEYWDS    GTP-BINDING PROTEIN, GDP, STRUCTURAL GENOMICS, NPPSFA, NATIONAL       
KEYWDS   2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN         
KEYWDS   3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, HYDROLASE           
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    M.KUKIMOTO-NIINO,K.MURAYAMA,M.SHIROUZU,S.KURAMITSU,S.YOKOYAMA,RIKEN   
AUTHOR   2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   3   13-JUL-11 2DBY    1       VERSN                                    
REVDAT   2   24-FEB-09 2DBY    1       VERSN                                    
REVDAT   1   16-JUN-06 2DBY    0                                                
JRNL        AUTH   M.KUKIMOTO-NIINO,K.MURAYAMA,M.SHIROUZU,S.KURAMITSU,          
JRNL        AUTH 2 S.YOKOYAMA                                                   
JRNL        TITL   CRYSTAL STRUCTURE OF THE GTP-BINDING PROTEIN YCHF IN         
JRNL        TITL 2 COMPLEXED WITH GDP                                           
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.76 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : NULL                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 44.73                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 1530045.990                    
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 99.4                           
REMARK   3   NUMBER OF REFLECTIONS             : 37703                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.191                           
REMARK   3   FREE R VALUE                     : 0.221                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 10.000                          
REMARK   3   FREE R VALUE TEST SET COUNT      : 3772                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.004                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.75                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.86                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 86.70                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 4973                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2200                       
REMARK   3   BIN FREE R VALUE                    : 0.2600                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 9.80                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 539                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.011                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2763                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 37                                      
REMARK   3   SOLVENT ATOMS            : 359                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 18.10                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 24.70                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 4.08000                                              
REMARK   3    B22 (A**2) : -0.14000                                             
REMARK   3    B33 (A**2) : -3.94000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.18                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.08                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.22                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.13                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.010                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.60                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 22.30                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.95                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.38                                                 
REMARK   3   BSOL        : 47.92                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  3  : LIGAND.PARAM                                   
REMARK   3  PARAMETER FILE  4  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  3   : LIGAND.TOP                                     
REMARK   3  TOPOLOGY FILE  4   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-DEC-05.                  
REMARK 100 THE RCSB ID CODE IS RCSB025232.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 07-NOV-05                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.2                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SPRING-8                           
REMARK 200  BEAMLINE                       : BL26B2                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.9794, 0.9789, 0.9640             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU JUPITER                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 37754                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.760                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY                : 4.664                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.04900                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 23.9059                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.82                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.28900                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 4.253                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: MAD                                            
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD                          
REMARK 200 SOFTWARE USED: SOLVE                                                 
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 46.40                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M SODIUM FORMATE, 0.1M SODIUM         
REMARK 280  ACETATE, PH 5.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z                                                 
REMARK 290       3555   -X+1/2,Y+1/2,-Z                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000       30.19200            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       66.58450            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       30.19200            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       66.58450            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER.                        
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ASP A   112                                                      
REMARK 465     PRO A   113                                                      
REMARK 465     ASP A   114                                                      
REMARK 465     VAL A   115                                                      
REMARK 465     VAL A   116                                                      
REMARK 465     HIS A   117                                                      
REMARK 465     VAL A   118                                                      
REMARK 465     MET A   119                                                      
REMARK 465     GLY A   120                                                      
REMARK 465     ARG A   121                                                      
REMARK 465     VAL A   122                                                      
REMARK 465     ASN A   367                                                      
REMARK 465     ALA A   368                                                      
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A 827        DISTANCE =  5.68 ANGSTROMS                       
REMARK 525    HOH A 834        DISTANCE =  5.58 ANGSTROMS                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 401                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 402                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 403                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: TTK003001291.1   RELATED DB: TARGETDB                    
DBREF  2DBY A    1   368  UNP    Q5SJ29   Q5SJ29_THET8     1    368             
SEQADV 2DBY MSE A    1  UNP  Q5SJ29    MET     1 MODIFIED RESIDUE               
SEQADV 2DBY MSE A  317  UNP  Q5SJ29    MET   317 MODIFIED RESIDUE               
SEQRES   1 A  368  MSE LEU ALA VAL GLY ILE VAL GLY LEU PRO ASN VAL GLY          
SEQRES   2 A  368  LYS SER THR LEU PHE ASN ALA LEU THR ARG ALA ASN ALA          
SEQRES   3 A  368  LEU ALA ALA ASN TYR PRO PHE ALA THR ILE ASP LYS ASN          
SEQRES   4 A  368  VAL GLY VAL VAL PRO LEU GLU ASP GLU ARG LEU TYR ALA          
SEQRES   5 A  368  LEU GLN ARG THR PHE ALA LYS GLY GLU ARG VAL PRO PRO          
SEQRES   6 A  368  VAL VAL PRO THR HIS VAL GLU PHE VAL ASP ILE ALA GLY          
SEQRES   7 A  368  LEU VAL LYS GLY ALA HIS LYS GLY GLU GLY LEU GLY ASN          
SEQRES   8 A  368  GLN PHE LEU ALA HIS ILE ARG GLU VAL ALA ALA ILE ALA          
SEQRES   9 A  368  HIS VAL LEU ARG CYS PHE PRO ASP PRO ASP VAL VAL HIS          
SEQRES  10 A  368  VAL MET GLY ARG VAL ASP PRO LEU GLU ASP ALA GLU VAL          
SEQRES  11 A  368  VAL GLU THR GLU LEU LEU LEU ALA ASP LEU ALA THR LEU          
SEQRES  12 A  368  GLU ARG ARG LEU GLU ARG LEU ARG LYS GLU ALA ARG ALA          
SEQRES  13 A  368  ASP ARG GLU ARG LEU PRO LEU LEU GLU ALA ALA GLU GLY          
SEQRES  14 A  368  LEU TYR VAL HIS LEU GLN GLU GLY LYS PRO ALA ARG THR          
SEQRES  15 A  368  PHE PRO PRO SER GLU ALA VAL ALA ARG PHE LEU LYS GLU          
SEQRES  16 A  368  THR PRO LEU LEU THR ALA LYS PRO VAL ILE TYR VAL ALA          
SEQRES  17 A  368  ASN VAL ALA GLU GLU ASP LEU PRO ASP GLY ARG GLY ASN          
SEQRES  18 A  368  PRO GLN VAL GLU ALA VAL ARG ARG LYS ALA LEU GLU GLU          
SEQRES  19 A  368  GLY ALA GLU VAL VAL VAL VAL SER ALA ARG LEU GLU ALA          
SEQRES  20 A  368  GLU LEU ALA GLU LEU SER GLY GLU GLU ALA ARG GLU LEU          
SEQRES  21 A  368  LEU ALA ALA TYR GLY LEU GLN GLU SER GLY LEU GLN ARG          
SEQRES  22 A  368  LEU ALA ARG ALA GLY TYR ARG ALA LEU ASP LEU LEU THR          
SEQRES  23 A  368  PHE PHE THR ALA GLY GLU LYS GLU VAL ARG ALA TRP THR          
SEQRES  24 A  368  VAL ARG ARG GLY THR LYS ALA PRO ARG ALA ALA GLY GLU          
SEQRES  25 A  368  ILE HIS SER ASP MSE GLU ARG GLY PHE ILE ARG ALA GLU          
SEQRES  26 A  368  VAL ILE PRO TRP ASP LYS LEU VAL GLU ALA GLY GLY TRP          
SEQRES  27 A  368  ALA ARG ALA LYS GLU ARG GLY TRP VAL ARG LEU GLU GLY          
SEQRES  28 A  368  LYS ASP TYR GLU VAL GLN ASP GLY ASP VAL ILE TYR VAL          
SEQRES  29 A  368  LEU PHE ASN ALA                                              
MODRES 2DBY MSE A    1  MET  SELENOMETHIONINE                                   
MODRES 2DBY MSE A  317  MET  SELENOMETHIONINE                                   
HET    MSE  A   1       8                                                       
HET    MSE  A 317       8                                                       
HET    GDP  A 501      28                                                       
HET    FMT  A 401       3                                                       
HET    FMT  A 402       3                                                       
HET    FMT  A 403       3                                                       
HETNAM     MSE SELENOMETHIONINE                                                 
HETNAM     GDP GUANOSINE-5'-DIPHOSPHATE                                         
HETNAM     FMT FORMIC ACID                                                      
FORMUL   1  MSE    2(C5 H11 N O2 SE)                                            
FORMUL   2  GDP    C10 H15 N5 O11 P2                                            
FORMUL   3  FMT    3(C H2 O2)                                                   
FORMUL   6  HOH   *359(H2 O)                                                    
HELIX    1   1 GLY A   13  ALA A   26  1                                  14    
HELIX    2   2 PRO A   32  ASP A   37  5                                   6    
HELIX    3   3 ASP A   47  ALA A   58  1                                  12    
HELIX    4   4 GLY A   90  GLU A   99  1                                  10    
HELIX    5   5 ASP A  123  ASP A  157  1                                  35    
HELIX    6   6 ARG A  160  GLU A  176  1                                  17    
HELIX    7   7 PRO A  179  PHE A  183  5                                   5    
HELIX    8   8 SER A  186  THR A  196  1                                  11    
HELIX    9   9 LEU A  198  LYS A  202  5                                   5    
HELIX   10  10 ALA A  211  LEU A  215  5                                   5    
HELIX   11  11 ASN A  221  GLY A  235  1                                  15    
HELIX   12  12 SER A  242  GLU A  251  1                                  10    
HELIX   13  13 SER A  253  TYR A  264  1                                  12    
HELIX   14  14 SER A  269  LEU A  282  1                                  14    
HELIX   15  15 LYS A  305  HIS A  314  1                                  10    
HELIX   16  16 SER A  315  ARG A  319  5                                   5    
HELIX   17  17 TRP A  329  GLY A  336  1                                   8    
HELIX   18  18 GLY A  337  ARG A  344  1                                   8    
SHEET    1   A 6 VAL A  40  PRO A  44  0                                        
SHEET    2   A 6 HIS A  70  ASP A  75 -1  O  PHE A  73   N  GLY A  41           
SHEET    3   A 6 ALA A   3  VAL A   7  1  N  ILE A   6   O  VAL A  74           
SHEET    4   A 6 ALA A 102  ARG A 108  1  O  ALA A 102   N  GLY A   5           
SHEET    5   A 6 VAL A 204  ASN A 209  1  O  VAL A 207   N  HIS A 105           
SHEET    6   A 6 GLU A 237  VAL A 241  1  O  GLU A 237   N  TYR A 206           
SHEET    1   B 3 VAL A  66  VAL A  67  0                                        
SHEET    2   B 3 VAL A 295  ARG A 301  1  O  ALA A 297   N  VAL A  67           
SHEET    3   B 3 LEU A 284  ALA A 290 -1  N  PHE A 287   O  TRP A 298           
SHEET    1   C 3 ARG A 348  GLU A 350  0                                        
SHEET    2   C 3 ARG A 323  PRO A 328 -1  N  ALA A 324   O  GLU A 350           
SHEET    3   C 3 ASP A 360  LEU A 365 -1  O  TYR A 363   N  GLU A 325           
LINK         C   MSE A   1                 N   LEU A   2     1555   1555  1.33  
LINK         C   ASP A 316                 N   MSE A 317     1555   1555  1.33  
LINK         C   MSE A 317                 N   GLU A 318     1555   1555  1.33  
CISPEP   1 LEU A  215    PRO A  216          0         0.57                     
SITE     1 AC1 16 ASN A  11  VAL A  12  GLY A  13  LYS A  14                    
SITE     2 AC1 16 SER A  15  THR A  16  GLN A  92  ARG A 108                    
SITE     3 AC1 16 PHE A 110  ASN A 209  VAL A 210  SER A 242                    
SITE     4 AC1 16 ALA A 243  ARG A 244  HOH A 826  HOH A 858                    
SITE     1 AC2  3 HIS A 105  ALA A 128  HOH A 566                               
SITE     1 AC3  3 ARG A 155  TYR A 363  VAL A 364                               
SITE     1 AC4  8 ALA A  28  ALA A  29  ASN A  30  PRO A  44                    
SITE     2 AC4  8 PRO A  68  THR A  69  HIS A  70  HOH A 554                    
CRYST1   60.384  133.169   46.432  90.00  90.00  90.00 P 21 21 2     4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.016561  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.007509  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.021537        0.00000                         
HETATM    1  N   MSE A   1      28.982  52.339  32.992  1.00 31.06           N  
HETATM    2  CA  MSE A   1      28.175  52.566  31.755  1.00 27.77           C  
HETATM    3  C   MSE A   1      26.696  52.705  32.110  1.00 28.39           C  
HETATM    4  O   MSE A   1      26.143  51.882  32.864  1.00 21.00           O  
HETATM    5  CB  MSE A   1      28.327  51.382  30.786  1.00 36.18           C  
HETATM    6  CG  MSE A   1      29.214  51.616  29.562  1.00 37.26           C  
HETATM    7 SE   MSE A   1      28.987  50.148  28.287  1.00 51.26          SE  
HETATM    8  CE  MSE A   1      29.636  48.720  29.437  1.00 38.97           C  
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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