HEADER OXIDOREDUCTASE 16-JUN-09 2WKO
TITLE STRUCTURE OF METAL LOADED PATHOGENIC SOD1 MUTANT G93A.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN];
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 2-154;
COMPND 5 SYNONYM: SUPEROXIDE DISMUTASE;
COMPND 6 EC: 1.15.1.1;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES;
COMPND 9 MOL_ID: 2;
COMPND 10 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN];
COMPND 11 CHAIN: F;
COMPND 12 FRAGMENT: RESIDUES 2-154;
COMPND 13 SYNONYM: SUPEROXIDE DISMUTASE;
COMPND 14 EC: 1.15.1.1;
COMPND 15 ENGINEERED: YES;
COMPND 16 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 ORGAN: BLOOD;
SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: YEP351;
SOURCE 10 MOL_ID: 2;
SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 12 ORGANISM_COMMON: HUMAN;
SOURCE 13 ORGANISM_TAXID: 9606;
SOURCE 14 ORGAN: BLOOD;
SOURCE 15 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE;
SOURCE 16 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST;
SOURCE 17 EXPRESSION_SYSTEM_TAXID: 4932;
SOURCE 18 EXPRESSION_SYSTEM_PLASMID: YEP351
KEYWDS AMYOTROPHIC LATERAL SCLEROSIS, PHOSPHOPROTEIN,
KEYWDS 2 OXIDOREDUCTASE, DISEASE MUTATION, NEURODEGENERATION,
KEYWDS 3 ACETYLATION, ANTIOXIDANT, METAL-BINDING
EXPDTA X-RAY DIFFRACTION
AUTHOR S.V.ANTONYUK,A.GALALELDEEN,R.STRANGE,L.WHITSON,N.NARAYANA,
AUTHOR 2 A.TAYLOR,J.P.SCHUERMANN,S.P.HOLLOWAY,S.S.HASNAIN,P.J.HART
REVDAT 2 08-DEC-09 2WKO 1 JRNL
REVDAT 1 24-NOV-09 2WKO 0
JRNL AUTH A.GALALELDEEN,R.W.STRANGE,L.J.WHITSON,S.V.ANTONYUK,
JRNL AUTH 2 N.NARAYANA,A.B.TAYLOR,J.P.SCHUERMANN,S.P.HOLLOWAY,
JRNL AUTH 3 S.S.HASNAIN,P.J.HART
JRNL TITL STRUCTURAL AND BIOPHYSICAL PROPERTIES OF METAL-
JRNL TITL 2 FREE PATHOGENIC SOD1 MUTANTS A4V AND G93A.
JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 492 40 2009
JRNL REFN ISSN 0003-9861
JRNL PMID 19800308
JRNL DOI 10.1016/J.ABB.2009.09.020
REMARK 2
REMARK 2 RESOLUTION. 1.97 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0003
REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.80
REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE
REMARK 3 COMPLETENESS FOR RANGE (%) : 93.65
REMARK 3 NUMBER OF REFLECTIONS : 17148
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.17666
REMARK 3 R VALUE (WORKING SET) : 0.17360
REMARK 3 FREE R VALUE : 0.23072
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1
REMARK 3 FREE R VALUE TEST SET COUNT : 914
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.972
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.023
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1159
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.90
REMARK 3 BIN R VALUE (WORKING SET) : 0.214
REMARK 3 BIN FREE R VALUE SET COUNT : 76
REMARK 3 BIN FREE R VALUE : 0.276
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2214
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 20
REMARK 3 SOLVENT ATOMS : 291
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 24.5
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.188
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 2.12
REMARK 3 B22 (A**2) : -1.69
REMARK 3 B33 (A**2) : -0.45
REMARK 3 B12 (A**2) : 0.00
REMARK 3 B13 (A**2) : -1.41
REMARK 3 B23 (A**2) : 0.00
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.213
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.436
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2263 ; 0.016 ; 0.021
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3056 ; 1.520 ; 1.937
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ;10.050 ; 5.065
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;39.566 ;25.579
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;16.025 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.552 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.104 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1720 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1080 ; 0.214 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1496 ; 0.304 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 255 ; 0.194 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.174 ; 0.200
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.247 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.167 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1509 ; 1.038 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2379 ; 1.668 ; 2.000
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 787 ; 2.667 ; 3.000
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 677 ; 4.060 ; 4.500
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE
REMARK 3 RIDING POSITIONS.
REMARK 4
REMARK 4 2WKO COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-09.
REMARK 100 THE PDBE ID CODE IS EBI-40147.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 26-FEB-04
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SRS
REMARK 200 BEAMLINE : PX9.6
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.87
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000
REMARK 200 DATA SCALING SOFTWARE : HKL2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19287
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.97
REMARK 200 RESOLUTION RANGE LOW (A) : 23.58
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6
REMARK 200 DATA REDUNDANCY : 2.6
REMARK 200 R MERGE (I) : 0.07
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.00
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03
REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9
REMARK 200 DATA REDUNDANCY IN SHELL : 2.4
REMARK 200 R MERGE FOR SHELL (I) : 0.20
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.40
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 2C9V
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20% P3350, 0.2 M AMMONIUM IODIDE
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.57850
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 GENERATING THE BIOMOLECULE
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 14140 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.32 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 100 CG CD
REMARK 470 ILE F 112 N
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 26 16.02 57.90
REMARK 500 ASN F 65 64.81 -150.32
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU A 154 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 46 ND1
REMARK 620 2 HIS A 120 NE2 98.0
REMARK 620 3 HIS A 48 NE2 135.1 126.8
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU F 154 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS F 120 NE2
REMARK 620 2 HIS F 46 ND1 100.3
REMARK 620 3 HIS F 48 NE2 121.6 137.1
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 155 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 83 OD1
REMARK 620 2 HIS A 71 ND1 91.9
REMARK 620 3 HIS A 80 ND1 115.4 121.8
REMARK 620 4 HIS A 63 ND1 110.2 102.5 112.7
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN F 155 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS F 80 ND1
REMARK 620 2 HIS F 71 ND1 123.8
REMARK 620 3 HIS F 63 ND1 109.9 104.2
REMARK 620 4 ASP F 83 OD1 115.8 96.1 104.7
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 154
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 155
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 160
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 161
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU F 154
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 155
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD F 161
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1L3N RELATED DB: PDB
REMARK 900 THE SOLUTION STRUCTURE OF REDUCED DIMERIC
REMARK 900 COPPER ZINC SOD:THE STRUCTURAL EFFECTS OF
REMARK 900 DIMERIZATION
REMARK 900 RELATED ID: 2AF2 RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF DISULFIDE REDUCED AND
REMARK 900 COPPER DEPLETEDHUMAN SUPEROXIDE DISMUTASE
REMARK 900 RELATED ID: 1UXL RELATED DB: PDB
REMARK 900 I113T MUTANT OF HUMAN SOD1
REMARK 900 RELATED ID: 1PTZ RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN CU, ZN
REMARK 900 SUPEROXIDE DISMUTASE,FAMILIAL AMYOTROPHIC
REMARK 900 LATERAL SCLEROSIS (FALS) MUTANT H43R
REMARK 900 RELATED ID: 1OEZ RELATED DB: PDB
REMARK 900 ZN HIS46ARG MUTANT OF HUMAN CU, ZN
REMARK 900 SUPEROXIDE DISMUTASE
REMARK 900 RELATED ID: 2VR8 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF
REMARK 900 HUMAN CU,ZN SUPEROXIDE DISMUTASE (CUZNSOD)
REMARK 900 AT 1.36 A RESOLUTION
REMARK 900 RELATED ID: 1RK7 RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF APO CU,ZN SUPEROXIDE
REMARK 900 DISMUTASE: ROLEOF METAL IONS IN PROTEIN
REMARK 900 FOLDING
REMARK 900 RELATED ID: 2VR7 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF
REMARK 900 HUMAN CU,ZN SUPEROXIDE DISMUTASE (CUZNSOD)
REMARK 900 AT 1.58 A RESOLUTION
REMARK 900 RELATED ID: 1HL4 RELATED DB: PDB
REMARK 900 THE STRUCTURE OF APO TYPE HUMAN CU, ZN
REMARK 900 SUPEROXIDE DISMUTASE
REMARK 900 RELATED ID: 1AZV RELATED DB: PDB
REMARK 900 FAMILIAL ALS MUTANT G37R CUZNSOD (HUMAN)
REMARK 900 RELATED ID: 2C9S RELATED DB: PDB
REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF ZN-
REMARK 900 ZN HUMAN SUPEROXIDE DISMUTASE
REMARK 900 RELATED ID: 1MFM RELATED DB: PDB
REMARK 900 MONOMERIC HUMAN SOD MUTANT F50E/G51E/E133Q
REMARK 900 AT ATOMIC RESOLUTION
REMARK 900 RELATED ID: 2V0A RELATED DB: PDB
REMARK 900 ATOMIC RESOLUTION CRYSTAL STRUCTURE OF HUMAN
REMARK 900 SUPEROXIDE DISMUTASE
REMARK 900 RELATED ID: 4SOD RELATED DB: PDB
REMARK 900 CU,ZN SUPEROXIDE DISMUTASE MUTANT WITH CYS
REMARK 900 6 REPLACED BY ALA AND CYS 111 REPLACED
REMARK 900 BY SER (C6A,C111S) WITH AN 18-RESIDUE
REMARK 900 HEPARIN-BINDING PEPTIDE FUSED TO THE C-
REMARK 900 TERMINUS (THEORETICAL MODEL)
REMARK 900 RELATED ID: 1OZU RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF FAMILIAL ALS MUTANT
REMARK 900 S134N OF HUMAN CU,ZN SUPEROXIDE DISMUTASE (
REMARK 900 CUZNSOD) TO 1.3A RESOLUTION
REMARK 900 RELATED ID: 1DSW RELATED DB: PDB
REMARK 900 THE SOLUTION STRUCTURE OF A MONOMERIC,
REMARK 900 REDUCED FORM OFHUMAN COPPER, ZINC SUPEROXIDE
REMARK 900 DISMUTASE BEARING THE SAMECHARGE AS THE
REMARK 900 NATIVE PROTEIN
REMARK 900 RELATED ID: 2VR6 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF
REMARK 900 HUMAN CU,ZN SUPEROXIDE DISMUTASE (CUZNSOD)
REMARK 900 AT 1.3 A RESOLUTION
REMARK 900 RELATED ID: 1KMG RELATED DB: PDB
REMARK 900 THE SOLUTION STRUCTURE OF MONOMERIC COPPER-
REMARK 900 FREE SUPEROXIDEDISMUTASE
REMARK 900 RELATED ID: 1OZT RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF APO-H46R FAMILIAL ALS
REMARK 900 MUTANT HUMAN CU,ZN SUPEROXIDE DISMUTASE (
REMARK 900 CUZNSOD) TO 2.5A RESOLUTION
REMARK 900 RELATED ID: 2C9V RELATED DB: PDB
REMARK 900 ATOMIC RESOLUTION STRUCTURE OF CU-ZN HUMAN
REMARK 900 SUPEROXIDE DISMUTASE
REMARK 900 RELATED ID: 1N18 RELATED DB: PDB
REMARK 900 THERMOSTABLE MUTANT OF HUMAN SUPEROXIDE
REMARK 900 DISMUTASE, C6A,C111S
REMARK 900 RELATED ID: 1BA9 RELATED DB: PDB
REMARK 900 THE SOLUTION STRUCTURE OF REDUCED MONOMERIC
REMARK 900 SUPEROXIDE DISMUTASE, NMR, 36 STRUCTURES
REMARK 900 RELATED ID: 1PU0 RELATED DB: PDB
REMARK 900 STRUCTURE OF HUMAN CU,ZN SUPEROXIDE
REMARK 900 DISMUTASE
REMARK 900 RELATED ID: 1FUN RELATED DB: PDB
REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH LYS 136
REMARK 900 REPLACED BY GLU, CYS 6 REPLACED BY ALA
REMARK 900 AND CYS 111 REPLACED BY SER (K136E, C6A,
REMARK 900 C111S)
REMARK 900 RELATED ID: 1SOS RELATED DB: PDB
REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH CYS 6
REMARK 900 REPLACED BY ALA AND CYS 111 REPLACED BY
REMARK 900 SER (C6A, C111S)
REMARK 900 RELATED ID: 1N19 RELATED DB: PDB
REMARK 900 STRUCTURE OF THE HSOD A4V MUTANT
REMARK 900 RELATED ID: 2C9U RELATED DB: PDB
REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF AS-
REMARK 900 ISOLATED CU-ZN HUMAN SUPEROXIDE DISMUTASE
REMARK 900 RELATED ID: 1HL5 RELATED DB: PDB
REMARK 900 THE STRUCTURE OF HOLO TYPE HUMAN CU, ZN
REMARK 900 SUPEROXIDE DISMUTASE
REMARK 900 RELATED ID: 1P1V RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF FALS-ASSOCIATED HUMAN
REMARK 900 COPPER-ZINCSUPEROXIDE DISMUTASE (CUZNSOD) MUTANT
REMARK 900 D125H TO 1.4A
REMARK 900 RELATED ID: 1SPD RELATED DB: PDB
REMARK 900 SUPEROXIDE DISMUTASE
REMARK 900 RELATED ID: 1UXM RELATED DB: PDB
REMARK 900 A4V MUTANT OF HUMAN SOD1
REMARK 900 RELATED ID: 3GZO RELATED DB: PDB
REMARK 900 RELATED ID: 3GZP RELATED DB: PDB
REMARK 900 RELATED ID: 3GZQ RELATED DB: PDB
DBREF 2WKO A 0 0 PDB 2WKO 2WKO 0 0
DBREF 2WKO A 1 153 UNP P00441 SODC_HUMAN 2 154
DBREF 2WKO F 0 0 PDB 2WKO 2WKO 0 0
DBREF 2WKO F 1 153 UNP P00441 SODC_HUMAN 2 154
SEQADV 2WKO ALA A 93 UNP P00441 GLY 94 ENGINEERED MUTATION
SEQADV 2WKO ALA F 93 UNP P00441 GLY 94 ENGINEERED MUTATION
SEQRES 1 A 154 ACE ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY
SEQRES 2 A 154 PRO VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER
SEQRES 3 A 154 ASN GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU
SEQRES 4 A 154 THR GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY
SEQRES 5 A 154 ASP ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE
SEQRES 6 A 154 ASN PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU
SEQRES 7 A 154 GLU ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP
SEQRES 8 A 154 LYS ASP ALA VAL ALA ASP VAL SER ILE GLU ASP SER VAL
SEQRES 9 A 154 ILE SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR
SEQRES 10 A 154 LEU VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY
SEQRES 11 A 154 GLY ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER
SEQRES 12 A 154 ARG LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN
SEQRES 1 F 154 ACE ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY
SEQRES 2 F 154 PRO VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER
SEQRES 3 F 154 ASN GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU
SEQRES 4 F 154 THR GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY
SEQRES 5 F 154 ASP ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE
SEQRES 6 F 154 ASN PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU
SEQRES 7 F 154 GLU ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP
SEQRES 8 F 154 LYS ASP ALA VAL ALA ASP VAL SER ILE GLU ASP SER VAL
SEQRES 9 F 154 ILE SER LEU SER GLY ASP HIS CSO ILE ILE GLY ARG THR
SEQRES 10 F 154 LEU VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY
SEQRES 11 F 154 GLY ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER
SEQRES 12 F 154 ARG LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN
MODRES 2WKO CSO F 111 CYS CYSTEINE SULFOXIDE
HET ACE A 0 3
HET CU A 154 1
HET ZN A 155 1
HET IOD A 160 2
HET IOD A 161 1
HET ACE F 0 3
HET CSO F 111 7
HET CU F 154 1
HET ZN F 155 1
HET IOD F 161 1
HETNAM CU COPPER (II) ION
HETNAM ACE ACETYL GROUP
HETNAM ZN ZINC ION
HETNAM CSO S-HYDROXYCYSTEINE
HETNAM IOD IODIDE ION
FORMUL 3 CU 2(CU 2+)
FORMUL 4 ACE 2(C2 H4 O)
FORMUL 5 ZN 2(ZN 2+)
FORMUL 6 CSO C3 H7 N O3 S
FORMUL 7 HOH *291(H2 O)
HELIX 1 1 ALA A 55 GLY A 61 5 7
HELIX 2 2 ASN A 131 GLY A 138 1 8
HELIX 3 3 ALA F 55 GLY F 61 5 7
HELIX 4 4 SER F 107 CSO F 111 5 5
HELIX 5 5 GLU F 133 GLY F 138 1 6
SHEET 1 AA 5 ALA A 95 ASP A 101 0
SHEET 2 AA 5 VAL A 29 LYS A 36 -1 O VAL A 29 N ASP A 101
SHEET 3 AA 5 GLN A 15 GLN A 22 -1 O GLN A 15 N LYS A 36
SHEET 4 AA 5 THR A 2 LEU A 8 -1 O THR A 2 N GLN A 22
SHEET 5 AA 5 GLY A 150 ALA A 152 -1 O GLY A 150 N VAL A 5
SHEET 1 AB 4 ASP A 83 ALA A 89 0
SHEET 2 AB 4 GLY A 41 HIS A 48 -1 O GLY A 41 N ALA A 89
SHEET 3 AB 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48
SHEET 4 AB 4 ARG A 143 VAL A 148 -1 N LEU A 144 O VAL A 119
SHEET 1 FA 5 ALA F 95 ASP F 101 0
SHEET 2 FA 5 VAL F 29 LYS F 36 -1 O VAL F 29 N ASP F 101
SHEET 3 FA 5 GLN F 15 GLN F 22 -1 O GLN F 15 N LYS F 36
SHEET 4 FA 5 THR F 2 LEU F 8 -1 O THR F 2 N GLN F 22
SHEET 5 FA 5 GLY F 150 ILE F 151 -1 O GLY F 150 N VAL F 5
SHEET 1 FB 4 ASP F 83 ALA F 89 0
SHEET 2 FB 4 GLY F 41 HIS F 48 -1 O GLY F 41 N ALA F 89
SHEET 3 FB 4 THR F 116 HIS F 120 -1 O THR F 116 N HIS F 48
SHEET 4 FB 4 ARG F 143 VAL F 148 -1 N LEU F 144 O VAL F 119
SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.13
SSBOND 2 CYS F 57 CYS F 146 1555 1555 2.13
LINK C ACE A 0 N ALA A 1 1555 1555 1.34
LINK CU CU A 154 NE2 HIS A 120 1555 1555 1.82
LINK CU CU A 154 NE2 HIS A 48 1555 1555 2.07
LINK CU CU A 154 ND1 HIS A 46 1555 1555 2.17
LINK ZN ZN A 155 OD1 ASP A 83 1555 1555 1.94
LINK ZN ZN A 155 ND1 HIS A 71 1555 1555 2.24
LINK ZN ZN A 155 ND1 HIS A 80 1555 1555 2.02
LINK ZN ZN A 155 ND1 HIS A 63 1555 1555 2.00
LINK C ACE F 0 N ALA F 1 1555 1555 1.34
LINK C HIS F 110 N CSO F 111 1555 1555 1.34
LINK C CSO F 111 N ILE F 112 1555 1555 1.33
LINK CU CU F 154 NE2 HIS F 120 1555 1555 2.10
LINK CU CU F 154 NE2 HIS F 48 1555 1555 2.04
LINK CU CU F 154 ND1 HIS F 46 1555 1555 2.16
LINK ZN ZN F 155 OD1 ASP F 83 1555 1555 2.04
LINK ZN ZN F 155 ND1 HIS F 63 1555 1555 2.03
LINK ZN ZN F 155 ND1 HIS F 71 1555 1555 2.04
LINK ZN ZN F 155 ND1 HIS F 80 1555 1555 2.09
SITE 1 AC1 4 HIS A 46 HIS A 48 HIS A 63 HIS A 120
SITE 1 AC2 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83
SITE 1 AC3 2 HOH A2128 HOH A2129
SITE 1 AC4 1 HOH F2102
SITE 1 AC5 4 HIS F 46 HIS F 48 HIS F 63 HIS F 120
SITE 1 AC6 4 HIS F 63 HIS F 71 HIS F 80 ASP F 83
SITE 1 AC7 1 HOH F2087
CRYST1 51.488 47.157 56.356 90.00 90.38 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019422 0.000000 0.000129 0.00000
SCALE2 0.000000 0.021206 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017745 0.00000
HETATM 1 C ACE A 0 19.473 4.898 25.618 1.00 46.07 C
HETATM 2 O ACE A 0 19.780 5.788 26.416 1.00 47.12 O
HETATM 3 CH3 ACE A 0 19.064 5.229 24.208 1.00 46.50 C
(ATOM LINES ARE NOT SHOWN.)
END
