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Database: PDB
Entry: 3GDO
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Original site: 3GDO 
HEADER    OXIDOREDUCTASE                          24-FEB-09   3GDO              
TITLE     CRYSTAL STRUCTURE OF PUTATIVE OXIDOREDUCTASE YVAA FROM BACILLUS       
TITLE    2 SUBTILIS                                                             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: UNCHARACTERIZED OXIDOREDUCTASE YVAA;                       
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 FRAGMENT: UNP RESIDUES 12-358;                                       
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS;              
SOURCE   3 ORGANISM_TAXID: 224308;                                              
SOURCE   4 STRAIN: 168;                                                         
SOURCE   5 GENE: BSU33530, YVAA;                                                
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC)                              
KEYWDS    STRUCTURAL GENOMICS, PUTATIVE OXIDOREDUCTASE YVAA, OXIDOREDUCTASE,    
KEYWDS   2 PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER    
KEYWDS   3 FOR STRUCTURAL GENOMICS, NYSGXRC                                     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER 
AUTHOR   2 FOR STRUCTURAL GENOMICS (NYSGXRC)                                    
REVDAT   5   21-FEB-24 3GDO    1       REMARK                                   
REVDAT   4   10-FEB-21 3GDO    1       AUTHOR JRNL   SEQADV                     
REVDAT   3   01-NOV-17 3GDO    1       REMARK                                   
REVDAT   2   13-JUL-11 3GDO    1       VERSN                                    
REVDAT   1   24-MAR-09 3GDO    0                                                
JRNL        AUTH   U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO                     
JRNL        TITL   STRUCTURE OF PUTATIVE OXIDOREDUCTASE YVAA FROM BACILLUS      
JRNL        TITL 2 SUBTILIS.                                                    
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.03 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC                                               
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 49797                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.206                           
REMARK   3   R VALUE            (WORKING SET) : 0.204                           
REMARK   3   FREE R VALUE                     : 0.249                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2533                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.03                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.09                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 3016                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 85.23                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2810                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 164                          
REMARK   3   BIN FREE R VALUE                    : 0.3100                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 5285                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 0                                       
REMARK   3   SOLVENT ATOMS            : 124                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 40.29                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -1.87000                                             
REMARK   3    B22 (A**2) : -1.03000                                             
REMARK   3    B33 (A**2) : 1.70000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : -2.02000                                             
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.197         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.176         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.132         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.835         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.958                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.941                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  5448 ; 0.016 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  7387 ; 1.515 ; 1.969       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   689 ; 6.196 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   248 ;39.259 ;24.435       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   965 ;16.011 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    33 ;18.280 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   835 ; 0.106 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  4099 ; 0.007 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  3380 ; 0.909 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  5469 ; 1.630 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  2068 ; 2.499 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1911 ; 4.030 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE       
REMARK   3  RIDING POSITIONS. 2. U VALUES: REFINED INDIVIDUALLY.                
REMARK   4                                                                      
REMARK   4 3GDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000051730.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 05-NOV-08                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 24-ID-C                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : NULL                               
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.979                              
REMARK 200  MONOCHROMATOR                  : SI(111) DOUBLE CRYSTAL             
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000                    
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 49833                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.030                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.5                               
REMARK 200  DATA REDUNDANCY                : 6.200                              
REMARK 200  R MERGE                    (I) : 0.08700                            
REMARK 200  R SYM                      (I) : 0.07800                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 22.1310                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.11                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 86.8                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 5.00                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.45900                            
REMARK 200  R SYM FOR SHELL            (I) : 0.36200                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.900                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SAD                                            
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD                          
REMARK 200 SOFTWARE USED: SHELXD, PHENIX, CCP4                                  
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 50.81                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5, 25% PEG 3350,      
REMARK 280  0.2M MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K, PH     
REMARK 280  6.5                                                                 
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       75.65450            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 28610 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.6 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     9                                                      
REMARK 465     GLN A   169                                                      
REMARK 465     ALA A   170                                                      
REMARK 465     ARG A   171                                                      
REMARK 465     TRP A   172                                                      
REMARK 465     ARG A   173                                                      
REMARK 465     GLU A   174                                                      
REMARK 465     LYS A   175                                                      
REMARK 465     GLU A   176                                                      
REMARK 465     GLY A   177                                                      
REMARK 465     THR A   178                                                      
REMARK 465     HIS A   358                                                      
REMARK 465     GLU A   359                                                      
REMARK 465     GLY A   360                                                      
REMARK 465     HIS A   361                                                      
REMARK 465     HIS A   362                                                      
REMARK 465     HIS A   363                                                      
REMARK 465     HIS A   364                                                      
REMARK 465     HIS A   365                                                      
REMARK 465     HIS A   366                                                      
REMARK 465     MET B     9                                                      
REMARK 465     ALA B   170                                                      
REMARK 465     ARG B   171                                                      
REMARK 465     TRP B   172                                                      
REMARK 465     ARG B   173                                                      
REMARK 465     GLU B   174                                                      
REMARK 465     LYS B   175                                                      
REMARK 465     GLU B   176                                                      
REMARK 465     GLY B   177                                                      
REMARK 465     THR B   178                                                      
REMARK 465     HIS B   358                                                      
REMARK 465     GLU B   359                                                      
REMARK 465     GLY B   360                                                      
REMARK 465     HIS B   361                                                      
REMARK 465     HIS B   362                                                      
REMARK 465     HIS B   363                                                      
REMARK 465     HIS B   364                                                      
REMARK 465     HIS B   365                                                      
REMARK 465     HIS B   366                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     ARG A 294    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLN B 169    CG   CD   OE1  NE2                                  
REMARK 470     ARG B 294    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU B 357    CG   CD   OE1  OE2                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   OE1  GLU A   114     NH1  ARG A   339              2.12            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLU A 275      -34.42   -134.17                                   
REMARK 500    LEU B 151       59.56   -146.23                                   
REMARK 500    GLU B 275      -14.87   -140.61                                   
REMARK 500    ALA B 325      150.64    -48.74                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: NYSGXRC-11137J   RELATED DB: TARGETDB                    
REMARK 900 RELATED ID: 3GFG   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF PUTATIVE OXIDOREDUCTASE YVAA FROM BACILLUS      
REMARK 900 SUBTILIS, TRICLINIC FORM                                             
DBREF  3GDO A   12   358  UNP    O32223   YVAA_BACSU      12    358             
DBREF  3GDO B   12   358  UNP    O32223   YVAA_BACSU      12    358             
SEQADV 3GDO MET A    9  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO SER A   10  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO LEU A   11  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO GLU A  359  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO GLY A  360  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS A  361  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS A  362  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS A  363  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS A  364  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS A  365  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS A  366  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO MET B    9  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO SER B   10  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO LEU B   11  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO GLU B  359  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO GLY B  360  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS B  361  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS B  362  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS B  363  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS B  364  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS B  365  UNP  O32223              EXPRESSION TAG                 
SEQADV 3GDO HIS B  366  UNP  O32223              EXPRESSION TAG                 
SEQRES   1 A  358  MET SER LEU ASP THR ILE LYS VAL GLY ILE LEU GLY TYR          
SEQRES   2 A  358  GLY LEU SER GLY SER VAL PHE HIS GLY PRO LEU LEU ASP          
SEQRES   3 A  358  VAL LEU ASP GLU TYR GLN ILE SER LYS ILE MET THR SER          
SEQRES   4 A  358  ARG THR GLU GLU VAL LYS ARG ASP PHE PRO ASP ALA GLU          
SEQRES   5 A  358  VAL VAL HIS GLU LEU GLU GLU ILE THR ASN ASP PRO ALA          
SEQRES   6 A  358  ILE GLU LEU VAL ILE VAL THR THR PRO SER GLY LEU HIS          
SEQRES   7 A  358  TYR GLU HIS THR MET ALA CYS ILE GLN ALA GLY LYS HIS          
SEQRES   8 A  358  VAL VAL MET GLU LYS PRO MET THR ALA THR ALA GLU GLU          
SEQRES   9 A  358  GLY GLU THR LEU LYS ARG ALA ALA ASP GLU LYS GLY VAL          
SEQRES  10 A  358  LEU LEU SER VAL TYR HIS ASN ARG ARG TRP ASP ASN ASP          
SEQRES  11 A  358  PHE LEU THR ILE LYS LYS LEU ILE SER GLU GLY SER LEU          
SEQRES  12 A  358  GLU ASP ILE ASN THR TYR GLN VAL SER TYR ASN ARG TYR          
SEQRES  13 A  358  ARG PRO GLU VAL GLN ALA ARG TRP ARG GLU LYS GLU GLY          
SEQRES  14 A  358  THR ALA THR GLY THR LEU TYR ASP LEU GLY SER HIS ILE          
SEQRES  15 A  358  ILE ASP GLN THR LEU HIS LEU PHE GLY MET PRO LYS ALA          
SEQRES  16 A  358  VAL THR ALA ASN VAL MET ALA GLN ARG GLU ASN ALA GLU          
SEQRES  17 A  358  THR VAL ASP TYR PHE HIS LEU THR LEU ASP TYR GLY LYS          
SEQRES  18 A  358  LEU GLN ALA ILE LEU TYR GLY GLY SER ILE VAL PRO ALA          
SEQRES  19 A  358  ASN GLY PRO ARG TYR GLN ILE HIS GLY LYS ASP SER SER          
SEQRES  20 A  358  PHE ILE LYS TYR GLY ILE ASP GLY GLN GLU ASP ALA LEU          
SEQRES  21 A  358  ARG ALA GLY ARG LYS PRO GLU ASP ASP SER TRP GLY ALA          
SEQRES  22 A  358  ASP VAL PRO GLU PHE TYR GLY LYS LEU THR THR ILE ARG          
SEQRES  23 A  358  GLY SER ASP LYS LYS THR GLU THR ILE PRO SER VAL ASN          
SEQRES  24 A  358  GLY SER TYR LEU THR TYR TYR ARG LYS ILE ALA GLU SER          
SEQRES  25 A  358  ILE ARG GLU GLY ALA ALA LEU PRO VAL THR ALA GLU GLU          
SEQRES  26 A  358  GLY ILE ASN VAL ILE ARG ILE ILE GLU ALA ALA MET GLU          
SEQRES  27 A  358  SER SER LYS GLU LYS ARG THR ILE MET LEU GLU HIS GLU          
SEQRES  28 A  358  GLY HIS HIS HIS HIS HIS HIS                                  
SEQRES   1 B  358  MET SER LEU ASP THR ILE LYS VAL GLY ILE LEU GLY TYR          
SEQRES   2 B  358  GLY LEU SER GLY SER VAL PHE HIS GLY PRO LEU LEU ASP          
SEQRES   3 B  358  VAL LEU ASP GLU TYR GLN ILE SER LYS ILE MET THR SER          
SEQRES   4 B  358  ARG THR GLU GLU VAL LYS ARG ASP PHE PRO ASP ALA GLU          
SEQRES   5 B  358  VAL VAL HIS GLU LEU GLU GLU ILE THR ASN ASP PRO ALA          
SEQRES   6 B  358  ILE GLU LEU VAL ILE VAL THR THR PRO SER GLY LEU HIS          
SEQRES   7 B  358  TYR GLU HIS THR MET ALA CYS ILE GLN ALA GLY LYS HIS          
SEQRES   8 B  358  VAL VAL MET GLU LYS PRO MET THR ALA THR ALA GLU GLU          
SEQRES   9 B  358  GLY GLU THR LEU LYS ARG ALA ALA ASP GLU LYS GLY VAL          
SEQRES  10 B  358  LEU LEU SER VAL TYR HIS ASN ARG ARG TRP ASP ASN ASP          
SEQRES  11 B  358  PHE LEU THR ILE LYS LYS LEU ILE SER GLU GLY SER LEU          
SEQRES  12 B  358  GLU ASP ILE ASN THR TYR GLN VAL SER TYR ASN ARG TYR          
SEQRES  13 B  358  ARG PRO GLU VAL GLN ALA ARG TRP ARG GLU LYS GLU GLY          
SEQRES  14 B  358  THR ALA THR GLY THR LEU TYR ASP LEU GLY SER HIS ILE          
SEQRES  15 B  358  ILE ASP GLN THR LEU HIS LEU PHE GLY MET PRO LYS ALA          
SEQRES  16 B  358  VAL THR ALA ASN VAL MET ALA GLN ARG GLU ASN ALA GLU          
SEQRES  17 B  358  THR VAL ASP TYR PHE HIS LEU THR LEU ASP TYR GLY LYS          
SEQRES  18 B  358  LEU GLN ALA ILE LEU TYR GLY GLY SER ILE VAL PRO ALA          
SEQRES  19 B  358  ASN GLY PRO ARG TYR GLN ILE HIS GLY LYS ASP SER SER          
SEQRES  20 B  358  PHE ILE LYS TYR GLY ILE ASP GLY GLN GLU ASP ALA LEU          
SEQRES  21 B  358  ARG ALA GLY ARG LYS PRO GLU ASP ASP SER TRP GLY ALA          
SEQRES  22 B  358  ASP VAL PRO GLU PHE TYR GLY LYS LEU THR THR ILE ARG          
SEQRES  23 B  358  GLY SER ASP LYS LYS THR GLU THR ILE PRO SER VAL ASN          
SEQRES  24 B  358  GLY SER TYR LEU THR TYR TYR ARG LYS ILE ALA GLU SER          
SEQRES  25 B  358  ILE ARG GLU GLY ALA ALA LEU PRO VAL THR ALA GLU GLU          
SEQRES  26 B  358  GLY ILE ASN VAL ILE ARG ILE ILE GLU ALA ALA MET GLU          
SEQRES  27 B  358  SER SER LYS GLU LYS ARG THR ILE MET LEU GLU HIS GLU          
SEQRES  28 B  358  GLY HIS HIS HIS HIS HIS HIS                                  
FORMUL   3  HOH   *124(H2 O)                                                    
HELIX    1   1 GLY A   22  PHE A   28  1                                   7    
HELIX    2   2 HIS A   29  ASP A   34  1                                   6    
HELIX    3   3 ARG A   48  PHE A   56  1                                   9    
HELIX    4   4 LEU A   65  ASN A   70  1                                   6    
HELIX    5   5 LEU A   85  ALA A   96  1                                  12    
HELIX    6   6 THR A  109  GLY A  124  1                                  16    
HELIX    7   7 HIS A  131  TRP A  135  5                                   5    
HELIX    8   8 ASP A  136  GLU A  148  1                                  13    
HELIX    9   9 GLY A  181  LEU A  186  1                                   6    
HELIX   10  10 LEU A  186  GLY A  199  1                                  14    
HELIX   11  11 GLY A  263  ALA A  270  1                                   8    
HELIX   12  12 VAL A  283  TYR A  287  5                                   5    
HELIX   13  13 TYR A  310  GLY A  324  1                                  15    
HELIX   14  14 THR A  330  LYS A  351  1                                  22    
HELIX   15  15 GLY B   22  PHE B   28  1                                   7    
HELIX   16  16 HIS B   29  VAL B   35  1                                   7    
HELIX   17  17 ARG B   48  PHE B   56  1                                   9    
HELIX   18  18 LEU B   65  ASN B   70  1                                   6    
HELIX   19  19 LEU B   85  ALA B   96  1                                  12    
HELIX   20  20 THR B  109  GLY B  124  1                                  16    
HELIX   21  21 HIS B  131  TRP B  135  5                                   5    
HELIX   22  22 ASP B  136  GLU B  148  1                                  13    
HELIX   23  23 GLY B  181  LEU B  186  1                                   6    
HELIX   24  24 LEU B  186  GLY B  199  1                                  14    
HELIX   25  25 GLY B  263  ALA B  270  1                                   8    
HELIX   26  26 VAL B  283  TYR B  287  5                                   5    
HELIX   27  27 TYR B  310  GLY B  324  1                                  15    
HELIX   28  28 THR B  330  LYS B  351  1                                  22    
SHEET    1   A 6 GLU A  60  VAL A  62  0                                        
SHEET    2   A 6 TYR A  39  MET A  45  1  N  SER A  42   O  GLU A  60           
SHEET    3   A 6 ILE A  14  LEU A  19  1  N  ILE A  14   O  GLN A  40           
SHEET    4   A 6 LEU A  76  VAL A  79  1  O  ILE A  78   N  LEU A  19           
SHEET    5   A 6 HIS A  99  GLU A 103  1  O  VAL A 101   N  VAL A  79           
SHEET    6   A 6 LEU A 127  TYR A 130  1  O  TYR A 130   N  MET A 102           
SHEET    1   B 9 ASP A 297  ILE A 303  0                                        
SHEET    2   B 9 GLY A 288  ARG A 294 -1  N  ARG A 294   O  ASP A 297           
SHEET    3   B 9 SER A 254  LYS A 258 -1  N  SER A 255   O  THR A 291           
SHEET    4   B 9 TYR A 247  HIS A 250 -1  N  TYR A 247   O  LYS A 258           
SHEET    5   B 9 THR A 156  SER A 160 -1  N  GLN A 158   O  GLN A 248           
SHEET    6   B 9 LEU A 230  GLY A 236  1  O  ILE A 233   N  VAL A 159           
SHEET    7   B 9 TYR A 220  TYR A 227 -1  N  LEU A 223   O  LEU A 234           
SHEET    8   B 9 ALA A 203  MET A 209 -1  N  ALA A 203   O  ASP A 226           
SHEET    9   B 9 ILE A 354  MET A 355 -1  O  ILE A 354   N  VAL A 204           
SHEET    1   C 6 GLU B  60  VAL B  62  0                                        
SHEET    2   C 6 TYR B  39  MET B  45  1  N  SER B  42   O  GLU B  60           
SHEET    3   C 6 ILE B  14  LEU B  19  1  N  VAL B  16   O  GLN B  40           
SHEET    4   C 6 LEU B  76  VAL B  79  1  O  ILE B  78   N  LEU B  19           
SHEET    5   C 6 HIS B  99  GLU B 103  1  O  VAL B 101   N  VAL B  79           
SHEET    6   C 6 LEU B 127  TYR B 130  1  O  TYR B 130   N  MET B 102           
SHEET    1   D 9 ASP B 297  ILE B 303  0                                        
SHEET    2   D 9 GLY B 288  ARG B 294 -1  N  LEU B 290   O  GLU B 301           
SHEET    3   D 9 SER B 254  LYS B 258 -1  N  SER B 255   O  THR B 291           
SHEET    4   D 9 TYR B 247  GLY B 251 -1  N  GLY B 251   O  SER B 254           
SHEET    5   D 9 ILE B 154  SER B 160 -1  N  ASN B 155   O  HIS B 250           
SHEET    6   D 9 LEU B 230  GLY B 236  1  O  ILE B 233   N  TYR B 157           
SHEET    7   D 9 TYR B 220  TYR B 227 -1  N  LEU B 223   O  LEU B 234           
SHEET    8   D 9 ALA B 203  MET B 209 -1  N  THR B 205   O  THR B 224           
SHEET    9   D 9 ILE B 354  MET B 355 -1  O  ILE B 354   N  VAL B 204           
CISPEP   1 LYS A  104    PRO A  105          0        -5.11                     
CISPEP   2 LYS B  104    PRO B  105          0       -11.88                     
CRYST1   49.324  151.309   56.395  90.00 107.14  90.00 P 1 21 1      4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.020274  0.000000  0.006252        0.00000                         
SCALE2      0.000000  0.006609  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.018556        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
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