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Database: PDB
Entry: 3LZC
LinkDB: 3LZC
Original site: 3LZC 
HEADER    BIOSYNTHETIC PROTEIN                    01-MAR-10   3LZC              
TITLE     CRYSTAL STRUCTURE OF DPH2 FROM PYROCOCCUS HORIKOSHII                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DPH2;                                                      
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII;                          
SOURCE   3 ORGANISM_TAXID: 53953;                                               
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   6 EXPRESSION_SYSTEM_STRAIN: B834(DE3);                                 
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PDESTF1                                   
KEYWDS    DIPHTHAMIDE BIOSYNTHESIS, RADICAL SAM ENZYME, GENE TRIPLICATION,      
KEYWDS   2 BIOSYNTHETIC PROTEIN                                                 
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.ZHANG,X.ZHU,A.T.TORELLI,M.LEE,B.DZIKOVSKI,R.M.KORALEWSKI,E.WANG,    
AUTHOR   2 J.FREED,C.KREBS,H.LIN,S.E.EALICK                                     
REVDAT   4   21-FEB-24 3LZC    1       SEQADV                                   
REVDAT   3   08-NOV-17 3LZC    1       REMARK                                   
REVDAT   2   14-JUL-10 3LZC    1       JRNL                                     
REVDAT   1   23-JUN-10 3LZC    0                                                
JRNL        AUTH   Y.ZHANG,X.ZHU,A.T.TORELLI,M.LEE,B.DZIKOVSKI,R.M.KORALEWSKI,  
JRNL        AUTH 2 E.WANG,J.FREED,C.KREBS,S.E.EALICK,H.LIN                      
JRNL        TITL   DIPHTHAMIDE BIOSYNTHESIS REQUIRES AN ORGANIC RADICAL         
JRNL        TITL 2 GENERATED BY AN IRON-SULPHUR ENZYME.                         
JRNL        REF    NATURE                        V. 465   891 2010              
JRNL        REFN                   ISSN 0028-0836                               
JRNL        PMID   20559380                                                     
JRNL        DOI    10.1038/NATURE09138                                          
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.26 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.5_2                                         
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ENGH & HUBER                                  
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 40.19                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 96.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 36367                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.204                           
REMARK   3   R VALUE            (WORKING SET) : 0.202                           
REMARK   3   FREE R VALUE                     : 0.240                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.080                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1848                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 40.1950 -  5.3140    0.99     2880   184  0.1730 0.2040        
REMARK   3     2  5.3140 -  4.2190    1.00     2787   141  0.1560 0.1570        
REMARK   3     3  4.2190 -  3.6860    0.99     2770   140  0.1690 0.1900        
REMARK   3     4  3.6860 -  3.3490    0.99     2743   131  0.2040 0.2620        
REMARK   3     5  3.3490 -  3.1090    0.99     2697   167  0.2200 0.2690        
REMARK   3     6  3.1090 -  2.9260    0.99     2696   135  0.2410 0.2860        
REMARK   3     7  2.9260 -  2.7800    0.99     2698   138  0.2370 0.3170        
REMARK   3     8  2.7800 -  2.6590    0.99     2662   140  0.2320 0.3300        
REMARK   3     9  2.6590 -  2.5560    0.99     2683   152  0.2330 0.2980        
REMARK   3    10  2.5560 -  2.4680    0.98     2630   161  0.2500 0.3470        
REMARK   3    11  2.4680 -  2.3910    0.96     2632   127  0.2460 0.2730        
REMARK   3    12  2.3910 -  2.3230    0.92     2487   104  0.2510 0.2880        
REMARK   3    13  2.3230 -  2.2610    0.80     2154   128  0.2590 0.3060        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.34                                          
REMARK   3   B_SOL              : 38.98                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.320            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL             
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 43.10                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 48.78                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 18.92600                                             
REMARK   3    B22 (A**2) : -1.78600                                             
REMARK   3    B33 (A**2) : -17.14000                                            
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.008           5382                                  
REMARK   3   ANGLE     :  1.035           7283                                  
REMARK   3   CHIRALITY :  0.067            820                                  
REMARK   3   PLANARITY :  0.004            938                                  
REMARK   3   DIHEDRAL  : 18.033           1975                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3LZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-10.                  
REMARK 100 THE DEPOSITION ID IS D_1000057913.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 21-APR-08; 05-AUG-08               
REMARK 200  TEMPERATURE           (KELVIN) : 100; 100                           
REMARK 200  PH                             : 5.3                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y; Y                               
REMARK 200  RADIATION SOURCE               : APS; APS                           
REMARK 200  BEAMLINE                       : 24-ID-C; 24-ID-E                   
REMARK 200  X-RAY GENERATOR MODEL          : NULL; NULL                         
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M; M                               
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97922; 0.97918                   
REMARK 200  MONOCHROMATOR                  : NULL; NULL                         
REMARK 200  OPTICS                         : NULL; NULL                         
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD; CCD                           
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315; ADSC QUANTUM     
REMARK 200                                   315                                
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000                    
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK, HKL-2000                
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 36367                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.250                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 97.2                               
REMARK 200  DATA REDUNDANCY                : 5.800                              
REMARK 200  R MERGE                    (I) : 0.06200                            
REMARK 200  R SYM                      (I) : 0.06200                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 8.9000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.29                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 81.9                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.00                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.30900                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.100                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH           
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD                          
REMARK 200 SOFTWARE USED: MLPHARE                                               
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 46.58                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 4000, 0.1 M AMMONIUM ACETATE,     
REMARK 280  0.05 M SODIUM CITRATE, 0.2 M KCL, 2% ETHYLENE GLYCOL, PH 5.3,       
REMARK 280  VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K                     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       29.50400            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       80.37650            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       41.29900            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       80.37650            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       29.50400            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       41.29900            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 27600 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A   -35                                                      
REMARK 465     GLY A   -34                                                      
REMARK 465     SER A   -33                                                      
REMARK 465     HIS A   -32                                                      
REMARK 465     HIS A   -31                                                      
REMARK 465     HIS A   -30                                                      
REMARK 465     HIS A   -29                                                      
REMARK 465     HIS A   -28                                                      
REMARK 465     HIS A   -27                                                      
REMARK 465     ASP A   -26                                                      
REMARK 465     ILE A   -25                                                      
REMARK 465     THR A   -24                                                      
REMARK 465     SER A   -23                                                      
REMARK 465     LEU A   -22                                                      
REMARK 465     TYR A   -21                                                      
REMARK 465     LYS A   -20                                                      
REMARK 465     LYS A   -19                                                      
REMARK 465     ALA A   -18                                                      
REMARK 465     GLY A   -17                                                      
REMARK 465     SER A   -16                                                      
REMARK 465     ALA A   -15                                                      
REMARK 465     ALA A   -14                                                      
REMARK 465     ALA A   -13                                                      
REMARK 465     VAL A   -12                                                      
REMARK 465     LEU A   -11                                                      
REMARK 465     GLU A   -10                                                      
REMARK 465     GLU A    -9                                                      
REMARK 465     ASN A    -8                                                      
REMARK 465     LEU A    -7                                                      
REMARK 465     TYR A    -6                                                      
REMARK 465     PHE A    -5                                                      
REMARK 465     GLN A    -4                                                      
REMARK 465     GLY A    -3                                                      
REMARK 465     SER A    -2                                                      
REMARK 465     PHE A    -1                                                      
REMARK 465     THR A     0                                                      
REMARK 465     MET B   -35                                                      
REMARK 465     GLY B   -34                                                      
REMARK 465     SER B   -33                                                      
REMARK 465     HIS B   -32                                                      
REMARK 465     HIS B   -31                                                      
REMARK 465     HIS B   -30                                                      
REMARK 465     HIS B   -29                                                      
REMARK 465     HIS B   -28                                                      
REMARK 465     HIS B   -27                                                      
REMARK 465     ASP B   -26                                                      
REMARK 465     ILE B   -25                                                      
REMARK 465     THR B   -24                                                      
REMARK 465     SER B   -23                                                      
REMARK 465     LEU B   -22                                                      
REMARK 465     TYR B   -21                                                      
REMARK 465     LYS B   -20                                                      
REMARK 465     LYS B   -19                                                      
REMARK 465     ALA B   -18                                                      
REMARK 465     GLY B   -17                                                      
REMARK 465     SER B   -16                                                      
REMARK 465     ALA B   -15                                                      
REMARK 465     ALA B   -14                                                      
REMARK 465     ALA B   -13                                                      
REMARK 465     VAL B   -12                                                      
REMARK 465     LEU B   -11                                                      
REMARK 465     GLU B   -10                                                      
REMARK 465     GLU B    -9                                                      
REMARK 465     ASN B    -8                                                      
REMARK 465     LEU B    -7                                                      
REMARK 465     TYR B    -6                                                      
REMARK 465     PHE B    -5                                                      
REMARK 465     GLN B    -4                                                      
REMARK 465     GLY B    -3                                                      
REMARK 465     SER B    -2                                                      
REMARK 465     PHE B    -1                                                      
REMARK 465     THR B     0                                                      
REMARK 465     ASP B   294                                                      
REMARK 465     TYR B   295                                                      
REMARK 465     ARG B   342                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     MET A   1    CG   SD   CE                                        
REMARK 470     LYS A  20    CG   CD   CE   NZ                                   
REMARK 470     GLU A  28    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 132    CG   CD   CE   NZ                                   
REMARK 470     ARG A 171    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS A 195    CG   CD   CE   NZ                                   
REMARK 470     GLU A 212    CG   CD   OE1  OE2                                  
REMARK 470     ARG A 213    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     MET A 226    CG   SD   CE                                        
REMARK 470     LYS A 229    CG   CD   CE   NZ                                   
REMARK 470     LYS A 252    CG   CD   CE   NZ                                   
REMARK 470     LYS A 256    CG   CD   CE   NZ                                   
REMARK 470     ARG A 289    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ARG A 342    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     MET B   1    CG   SD   CE                                        
REMARK 470     LYS B   7    CG   CD   CE   NZ                                   
REMARK 470     GLU B   9    CG   CD   OE1  OE2                                  
REMARK 470     LYS B  12    CG   CD   CE   NZ                                   
REMARK 470     LYS B  15    CG   CD   CE   NZ                                   
REMARK 470     ILE B  17    CG1  CG2  CD1                                       
REMARK 470     LYS B  20    CG   CD   CE   NZ                                   
REMARK 470     ARG B  98    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ARG B 171    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS B 217    CG   CD   CE   NZ                                   
REMARK 470     LYS B 229    CG   CD   CE   NZ                                   
REMARK 470     LYS B 256    CG   CD   CE   NZ                                   
REMARK 470     ARG B 289    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ARG B 299    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU B 329    CG   CD   OE1  OE2                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ALA A  62       42.78    -95.81                                   
REMARK 500    ARG A 243       60.08   -109.96                                   
REMARK 500    ASN A 267      -84.82    -99.98                                   
REMARK 500    VAL A 285       77.50   -112.12                                   
REMARK 500    ALA A 286     -109.81   -156.69                                   
REMARK 500    THR A 341      -69.59   -127.91                                   
REMARK 500    ALA B  62       45.90    -89.47                                   
REMARK 500    ASN B 267      -83.20   -105.37                                   
REMARK 500    VAL B 285       62.94   -112.94                                   
REMARK 500    ALA B 286     -112.34   -138.95                                   
REMARK 500    ALA B 297       -1.74   -140.08                                   
REMARK 500    GLU B 329      -74.43    -65.01                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3LZD   RELATED DB: PDB                                   
REMARK 900 DIPHTHAMIDE BIOSYNTHESIS REQUIRES A SAM-DEPENDANT [4FE-4S]-          
REMARK 900 CONTAINING ENZYME                                                    
DBREF  3LZC A    1   342  UNP    O58832   O58832_PYRHO     1    342             
DBREF  3LZC B    1   342  UNP    O58832   O58832_PYRHO     1    342             
SEQADV 3LZC MET A  -35  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLY A  -34  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC SER A  -33  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS A  -32  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS A  -31  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS A  -30  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS A  -29  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS A  -28  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS A  -27  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ASP A  -26  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ILE A  -25  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC THR A  -24  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC SER A  -23  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC LEU A  -22  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC TYR A  -21  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC LYS A  -20  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC LYS A  -19  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ALA A  -18  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLY A  -17  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC SER A  -16  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ALA A  -15  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ALA A  -14  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ALA A  -13  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC VAL A  -12  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC LEU A  -11  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLU A  -10  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLU A   -9  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ASN A   -8  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC LEU A   -7  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC TYR A   -6  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC PHE A   -5  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLN A   -4  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLY A   -3  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC SER A   -2  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC PHE A   -1  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC THR A    0  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC MET B  -35  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLY B  -34  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC SER B  -33  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS B  -32  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS B  -31  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS B  -30  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS B  -29  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS B  -28  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC HIS B  -27  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ASP B  -26  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ILE B  -25  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC THR B  -24  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC SER B  -23  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC LEU B  -22  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC TYR B  -21  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC LYS B  -20  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC LYS B  -19  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ALA B  -18  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLY B  -17  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC SER B  -16  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ALA B  -15  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ALA B  -14  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ALA B  -13  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC VAL B  -12  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC LEU B  -11  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLU B  -10  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLU B   -9  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC ASN B   -8  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC LEU B   -7  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC TYR B   -6  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC PHE B   -5  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLN B   -4  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC GLY B   -3  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC SER B   -2  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC PHE B   -1  UNP  O58832              EXPRESSION TAG                 
SEQADV 3LZC THR B    0  UNP  O58832              EXPRESSION TAG                 
SEQRES   1 A  378  MET GLY SER HIS HIS HIS HIS HIS HIS ASP ILE THR SER          
SEQRES   2 A  378  LEU TYR LYS LYS ALA GLY SER ALA ALA ALA VAL LEU GLU          
SEQRES   3 A  378  GLU ASN LEU TYR PHE GLN GLY SER PHE THR MET LEU HIS          
SEQRES   4 A  378  GLU ILE PRO LYS SER GLU ILE LEU LYS GLU LEU LYS ARG          
SEQRES   5 A  378  ILE GLY ALA LYS ARG VAL LEU ILE GLN SER PRO GLU GLY          
SEQRES   6 A  378  LEU ARG ARG GLU ALA GLU GLU LEU ALA GLY PHE LEU GLU          
SEQRES   7 A  378  GLU ASN ASN ILE GLU VAL PHE LEU HIS GLY GLU ILE ASN          
SEQRES   8 A  378  TYR GLY ALA CYS ASP PRO ALA ASP ARG GLU ALA LYS LEU          
SEQRES   9 A  378  VAL GLY CYS ASP ALA LEU ILE HIS LEU GLY HIS SER TYR          
SEQRES  10 A  378  MET LYS LEU PRO LEU GLU VAL PRO THR ILE PHE VAL PRO          
SEQRES  11 A  378  ALA PHE ALA ARG VAL SER VAL VAL GLU ALA LEU LYS GLU          
SEQRES  12 A  378  ASN ILE GLY GLU ILE LYS LYS LEU GLY ARG LYS ILE ILE          
SEQRES  13 A  378  VAL THR THR THR ALA GLN HIS ILE HIS GLN LEU LYS GLU          
SEQRES  14 A  378  ALA LYS GLU PHE LEU GLU SER GLU GLY PHE GLU VAL SER          
SEQRES  15 A  378  ILE GLY ARG GLY ASP SER ARG ILE SER TRP PRO GLY GLN          
SEQRES  16 A  378  VAL LEU GLY CYS ASN TYR SER VAL ALA LYS VAL ARG GLY          
SEQRES  17 A  378  GLU GLY ILE LEU PHE ILE GLY SER GLY ILE PHE HIS PRO          
SEQRES  18 A  378  LEU GLY LEU ALA VAL ALA THR ARG LYS LYS VAL LEU ALA          
SEQRES  19 A  378  ILE ASP PRO TYR THR LYS ALA PHE SER TRP ILE ASP PRO          
SEQRES  20 A  378  GLU ARG PHE ILE ARG LYS ARG TRP ALA GLN ILE ALA LYS          
SEQRES  21 A  378  ALA MET ASP ALA LYS LYS PHE GLY VAL ILE VAL SER ILE          
SEQRES  22 A  378  LYS LYS GLY GLN LEU ARG LEU ALA GLU ALA LYS ARG ILE          
SEQRES  23 A  378  VAL LYS LEU LEU LYS LYS HIS GLY ARG GLU ALA ARG LEU          
SEQRES  24 A  378  ILE VAL MET ASN ASP VAL ASN TYR HIS LYS LEU GLU GLY          
SEQRES  25 A  378  PHE PRO PHE GLU ALA TYR VAL VAL VAL ALA CYS PRO ARG          
SEQRES  26 A  378  VAL PRO LEU ASP ASP TYR GLY ALA TRP ARG LYS PRO VAL          
SEQRES  27 A  378  LEU THR PRO LYS GLU VAL GLU ILE LEU LEU GLY LEU ARG          
SEQRES  28 A  378  GLU GLU TYR GLU PHE ASP GLU ILE LEU GLY GLY PRO ARG          
SEQRES  29 A  378  GLU SER ASP GLU PRO PHE GLY ILE SER ILE HIS SER THR          
SEQRES  30 A  378  ARG                                                          
SEQRES   1 B  378  MET GLY SER HIS HIS HIS HIS HIS HIS ASP ILE THR SER          
SEQRES   2 B  378  LEU TYR LYS LYS ALA GLY SER ALA ALA ALA VAL LEU GLU          
SEQRES   3 B  378  GLU ASN LEU TYR PHE GLN GLY SER PHE THR MET LEU HIS          
SEQRES   4 B  378  GLU ILE PRO LYS SER GLU ILE LEU LYS GLU LEU LYS ARG          
SEQRES   5 B  378  ILE GLY ALA LYS ARG VAL LEU ILE GLN SER PRO GLU GLY          
SEQRES   6 B  378  LEU ARG ARG GLU ALA GLU GLU LEU ALA GLY PHE LEU GLU          
SEQRES   7 B  378  GLU ASN ASN ILE GLU VAL PHE LEU HIS GLY GLU ILE ASN          
SEQRES   8 B  378  TYR GLY ALA CYS ASP PRO ALA ASP ARG GLU ALA LYS LEU          
SEQRES   9 B  378  VAL GLY CYS ASP ALA LEU ILE HIS LEU GLY HIS SER TYR          
SEQRES  10 B  378  MET LYS LEU PRO LEU GLU VAL PRO THR ILE PHE VAL PRO          
SEQRES  11 B  378  ALA PHE ALA ARG VAL SER VAL VAL GLU ALA LEU LYS GLU          
SEQRES  12 B  378  ASN ILE GLY GLU ILE LYS LYS LEU GLY ARG LYS ILE ILE          
SEQRES  13 B  378  VAL THR THR THR ALA GLN HIS ILE HIS GLN LEU LYS GLU          
SEQRES  14 B  378  ALA LYS GLU PHE LEU GLU SER GLU GLY PHE GLU VAL SER          
SEQRES  15 B  378  ILE GLY ARG GLY ASP SER ARG ILE SER TRP PRO GLY GLN          
SEQRES  16 B  378  VAL LEU GLY CYS ASN TYR SER VAL ALA LYS VAL ARG GLY          
SEQRES  17 B  378  GLU GLY ILE LEU PHE ILE GLY SER GLY ILE PHE HIS PRO          
SEQRES  18 B  378  LEU GLY LEU ALA VAL ALA THR ARG LYS LYS VAL LEU ALA          
SEQRES  19 B  378  ILE ASP PRO TYR THR LYS ALA PHE SER TRP ILE ASP PRO          
SEQRES  20 B  378  GLU ARG PHE ILE ARG LYS ARG TRP ALA GLN ILE ALA LYS          
SEQRES  21 B  378  ALA MET ASP ALA LYS LYS PHE GLY VAL ILE VAL SER ILE          
SEQRES  22 B  378  LYS LYS GLY GLN LEU ARG LEU ALA GLU ALA LYS ARG ILE          
SEQRES  23 B  378  VAL LYS LEU LEU LYS LYS HIS GLY ARG GLU ALA ARG LEU          
SEQRES  24 B  378  ILE VAL MET ASN ASP VAL ASN TYR HIS LYS LEU GLU GLY          
SEQRES  25 B  378  PHE PRO PHE GLU ALA TYR VAL VAL VAL ALA CYS PRO ARG          
SEQRES  26 B  378  VAL PRO LEU ASP ASP TYR GLY ALA TRP ARG LYS PRO VAL          
SEQRES  27 B  378  LEU THR PRO LYS GLU VAL GLU ILE LEU LEU GLY LEU ARG          
SEQRES  28 B  378  GLU GLU TYR GLU PHE ASP GLU ILE LEU GLY GLY PRO ARG          
SEQRES  29 B  378  GLU SER ASP GLU PRO PHE GLY ILE SER ILE HIS SER THR          
SEQRES  30 B  378  ARG                                                          
FORMUL   3  HOH   *155(H2 O)                                                    
HELIX    1   1 PRO A    6  GLY A   18  1                                  13    
HELIX    2   2 PRO A   27  GLY A   29  5                                   3    
HELIX    3   3 LEU A   30  GLU A   43  1                                  14    
HELIX    4   4 ALA A   62  VAL A   69  1                                   8    
HELIX    5   5 VAL A  101  ASN A  108  1                                   8    
HELIX    6   6 ASN A  108  LYS A  114  1                                   7    
HELIX    7   7 ALA A  125  HIS A  129  5                                   5    
HELIX    8   8 GLN A  130  GLU A  141  1                                  12    
HELIX    9   9 TYR A  165  LYS A  169  5                                   5    
HELIX   10  10 ILE A  182  ARG A  193  1                                  12    
HELIX   11  11 PRO A  211  ALA A  225  1                                  15    
HELIX   12  12 ARG A  243  HIS A  257  1                                  15    
HELIX   13  13 ASN A  270  GLU A  275  5                                   6    
HELIX   14  14 PRO A  288  ASP A  293  1                                   6    
HELIX   15  15 THR A  304  LEU A  312  1                                   9    
HELIX   16  16 PRO B    6  GLY B   18  1                                  13    
HELIX   17  17 PRO B   27  GLY B   29  5                                   3    
HELIX   18  18 LEU B   30  ASN B   44  1                                  15    
HELIX   19  19 ALA B   62  VAL B   69  1                                   8    
HELIX   20  20 SER B  100  GLU B  107  1                                   8    
HELIX   21  21 ASN B  108  LYS B  114  1                                   7    
HELIX   22  22 ALA B  125  HIS B  129  5                                   5    
HELIX   23  23 GLN B  130  GLU B  141  1                                  12    
HELIX   24  24 TYR B  165  LYS B  169  5                                   5    
HELIX   25  25 ILE B  182  ARG B  193  1                                  12    
HELIX   26  26 PRO B  211  MET B  226  1                                  16    
HELIX   27  27 ARG B  243  HIS B  257  1                                  15    
HELIX   28  28 ASN B  270  GLU B  275  5                                   6    
HELIX   29  29 PRO B  288  ASP B  293  1                                   6    
HELIX   30  30 THR B  304  LEU B  312  1                                   9    
SHEET    1   A 9 SER A 337  HIS A 339  0                                        
SHEET    2   A 9 THR A  90  PRO A  94 -1  N  THR A  90   O  HIS A 339           
SHEET    3   A 9 ALA A  73  GLY A  78  1  N  HIS A  76   O  ILE A  91           
SHEET    4   A 9 ARG A  21  GLN A  25  1  N  LEU A  23   O  ILE A  75           
SHEET    5   A 9 GLU A  47  HIS A  51  1  O  HIS A  51   N  ILE A  24           
SHEET    6   A 9 GLU B 260  MET B 266  1  O  VAL B 265   N  LEU A  50           
SHEET    7   A 9 LYS B 230  SER B 236  1  N  VAL B 233   O  ARG B 262           
SHEET    8   A 9 ALA B 281  VAL B 284  1  O  VAL B 283   N  ILE B 234           
SHEET    9   A 9 VAL B 302  LEU B 303  1  O  LEU B 303   N  TYR B 282           
SHEET    1   B 5 GLU A 144  SER A 146  0                                        
SHEET    2   B 5 LYS A 118  THR A 123  1  N  ILE A 119   O  SER A 146           
SHEET    3   B 5 GLY A 174  ILE A 178  1  O  LEU A 176   N  ILE A 120           
SHEET    4   B 5 LYS A 195  ILE A 199  1  O  LYS A 195   N  ILE A 175           
SHEET    5   B 5 PHE A 206  TRP A 208 -1  O  SER A 207   N  ALA A 198           
SHEET    1   C 9 VAL A 302  LEU A 303  0                                        
SHEET    2   C 9 ALA A 281  VAL A 284  1  N  TYR A 282   O  LEU A 303           
SHEET    3   C 9 LYS A 230  SER A 236  1  N  ILE A 234   O  VAL A 283           
SHEET    4   C 9 GLU A 260  MET A 266  1  O  ARG A 262   N  VAL A 233           
SHEET    5   C 9 GLU B  47  HIS B  51  1  O  LEU B  50   N  VAL A 265           
SHEET    6   C 9 ARG B  21  GLN B  25  1  N  VAL B  22   O  PHE B  49           
SHEET    7   C 9 ALA B  73  GLY B  78  1  O  ILE B  75   N  LEU B  23           
SHEET    8   C 9 THR B  90  PRO B  94  1  O  ILE B  91   N  LEU B  74           
SHEET    9   C 9 SER B 337  HIS B 339 -1  O  HIS B 339   N  THR B  90           
SHEET    1   D 5 GLU B 144  SER B 146  0                                        
SHEET    2   D 5 LYS B 118  THR B 123  1  N  ILE B 119   O  SER B 146           
SHEET    3   D 5 ILE B 175  ILE B 178  1  O  LEU B 176   N  ILE B 120           
SHEET    4   D 5 VAL B 196  ILE B 199  1  O  LEU B 197   N  PHE B 177           
SHEET    5   D 5 PHE B 206  TRP B 208 -1  O  SER B 207   N  ALA B 198           
CRYST1   59.008   82.598  160.753  90.00  90.00  90.00 P 21 21 21    8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.016947  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.012107  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.006221        0.00000                         
(ATOM LINES ARE NOT SHOWN.)
END                                                                             
DBGET integrated database retrieval system