HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-APR-12 4ER5
TITLE CRYSTAL STRUCTURE OF HUMAN DOT1L IN COMPLEX WITH 2 MOLECULES OF
TITLE 2 EPZ004777
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: DOT1-LIKE PROTEIN, HISTONE H3-K79 METHYLTRANSFERASE, H3-K79-
COMPND 5 HMTASE, LYSINE N-METHYLTRANSFERASE 4;
COMPND 6 EC: 2.1.1.43;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: DOT1L, KIAA1814, KMT4;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 V2R PRARE2;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL
KEYWDS HISTONE, METHYLTRANSFERASE, EPIGENETICS, TRANSFERASE-TRANSFERASE
KEYWDS 2 INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR A.K.WERNIMONT,W.TEMPEL,W.YU,A.SCOPTON,Y.LI,K.T.NGUYEN,A.FEDERATION,
AUTHOR 2 J.MARINEAU,J.QI,M.VEDADI,J.E.BRADNER,M.SCHAPIRA,C.H.ARROWSMITH,
AUTHOR 3 A.M.EDWARDS,C.BOUNTRA,P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM (SGC)
REVDAT 1 16-MAY-12 4ER5 0
JRNL AUTH A.K.WERNIMONT,W.TEMPEL,W.YU,A.SCOPTON,Y.LI,K.T.NGUYEN,
JRNL AUTH 2 A.FEDERATION,J.MARINEAU,J.QI,M.VEDADI,J.E.BRADNER,
JRNL AUTH 3 M.SCHAPIRA,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,P.J.BROWN
JRNL TITL CRYSTAL STRUCTURE OF HUMAN DOT1L IN COMPLEX WITH 2 MOLECULES
JRNL TITL 2 OF EPZ004777
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.57 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.5.0109
REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.24
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 22247
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : PDB ENTRY 3QOW
REMARK 3 R VALUE (WORKING + TEST SET) : 0.196
REMARK 3 R VALUE (WORKING SET) : 0.195
REMARK 3 FREE R VALUE : 0.218
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 1100
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.57
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1564
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00
REMARK 3 BIN R VALUE (WORKING SET) : 0.2800
REMARK 3 BIN FREE R VALUE SET COUNT : 79
REMARK 3 BIN FREE R VALUE : 0.2820
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2535
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 83
REMARK 3 SOLVENT ATOMS : 20
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.73
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.52000
REMARK 3 B22 (A**2) : -0.52000
REMARK 3 B33 (A**2) : 0.78000
REMARK 3 B12 (A**2) : -0.26000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.256
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.508
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2702 ; 0.011 ; 0.021
REMARK 3 BOND LENGTHS OTHERS (A): 1772 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3692 ; 1.307 ; 1.930
REMARK 3 BOND ANGLES OTHERS (DEGREES): 4314 ; 0.871 ; 2.988
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 5.683 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;33.011 ;23.540
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;13.989 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.913 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 408 ; 0.074 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2987 ; 0.006 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 558 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1654 ; 0.659 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 657 ; 0.092 ; 1.500
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2662 ; 1.253 ; 2.000
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1048 ; 1.624 ; 3.000
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1027 ; 2.757 ; 4.500
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 4 A 341
REMARK 3 ORIGIN FOR THE GROUP (A): 26.6645 57.9165 2.9241
REMARK 3 T TENSOR
REMARK 3 T11: 0.0257 T22: 0.0980
REMARK 3 T33: 0.0321 T12: 0.0069
REMARK 3 T13: -0.0094 T23: -0.0123
REMARK 3 L TENSOR
REMARK 3 L11: 6.5240 L22: 2.3269
REMARK 3 L33: 0.5068 L12: -2.9837
REMARK 3 L13: -0.2355 L23: -0.0850
REMARK 3 S TENSOR
REMARK 3 S11: -0.0803 S12: 0.3092 S13: 0.1284
REMARK 3 S21: -0.0418 S22: -0.0308 S23: -0.0793
REMARK 3 S31: 0.0043 S32: -0.0525 S33: 0.1111
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 4ER5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-12.
REMARK 100 THE RCSB ID CODE IS RCSB071966.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 29-OCT-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 31-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979310
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22277
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570
REMARK 200 RESOLUTION RANGE LOW (A) : 49.243
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 11.000
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.09400
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 11.30
REMARK 200 R MERGE FOR SHELL (I) : 0.93900
REMARK 200 R SYM FOR SHELL (I) : 0.93900
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: RIGID BODY REFINEMENT
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 66.76
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M NAFORMATE, 0.1 M NAACET, PH 4.5,
REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/6
REMARK 290 6555 X-Y,X,Z+5/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.45267
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.72633
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.58950
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.86317
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.31583
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL MOLECULE IS UNKNOWN.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 0
REMARK 465 MET A 1
REMARK 465 GLY A 2
REMARK 465 GLU A 3
REMARK 465 ASN A 57
REMARK 465 TYR A 58
REMARK 465 VAL A 59
REMARK 465 LEU A 60
REMARK 465 ILE A 61
REMARK 465 ASP A 62
REMARK 465 TRP A 305
REMARK 465 THR A 306
REMARK 465 GLY A 307
REMARK 465 ARG A 342
REMARK 465 ARG A 343
REMARK 465 ARG A 344
REMARK 465 GLN A 345
REMARK 465 GLN A 346
REMARK 465 ARG A 347
REMARK 465 GLU A 348
REMARK 465 SER A 349
REMARK 465 LYS A 350
REMARK 465 SER A 351
REMARK 465 ASN A 352
REMARK 465 ALA A 353
REMARK 465 ALA A 354
REMARK 465 THR A 355
REMARK 465 PRO A 356
REMARK 465 THR A 357
REMARK 465 LYS A 358
REMARK 465 GLY A 359
REMARK 465 PRO A 360
REMARK 465 GLU A 361
REMARK 465 GLY A 362
REMARK 465 LYS A 363
REMARK 465 VAL A 364
REMARK 465 ALA A 365
REMARK 465 GLY A 366
REMARK 465 PRO A 367
REMARK 465 ALA A 368
REMARK 465 ASP A 369
REMARK 465 ALA A 370
REMARK 465 PRO A 371
REMARK 465 MET A 372
REMARK 465 ASP A 373
REMARK 465 SER A 374
REMARK 465 GLY A 375
REMARK 465 ALA A 376
REMARK 465 GLU A 377
REMARK 465 GLU A 378
REMARK 465 GLU A 379
REMARK 465 LYS A 380
REMARK 465 ALA A 381
REMARK 465 GLY A 382
REMARK 465 ALA A 383
REMARK 465 ALA A 384
REMARK 465 THR A 385
REMARK 465 VAL A 386
REMARK 465 LYS A 387
REMARK 465 LYS A 388
REMARK 465 PRO A 389
REMARK 465 SER A 390
REMARK 465 PRO A 391
REMARK 465 SER A 392
REMARK 465 LYS A 393
REMARK 465 ALA A 394
REMARK 465 ARG A 395
REMARK 465 LYS A 396
REMARK 465 LYS A 397
REMARK 465 LYS A 398
REMARK 465 LEU A 399
REMARK 465 ASN A 400
REMARK 465 LYS A 401
REMARK 465 LYS A 402
REMARK 465 GLY A 403
REMARK 465 ARG A 404
REMARK 465 LYS A 405
REMARK 465 MET A 406
REMARK 465 ALA A 407
REMARK 465 GLY A 408
REMARK 465 ARG A 409
REMARK 465 LYS A 410
REMARK 465 ARG A 411
REMARK 465 GLY A 412
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 4 CG CD CE NZ
REMARK 470 GLU A 16 CG CD OE1 OE2
REMARK 470 LYS A 29 CG CD CE NZ
REMARK 470 ARG A 42 CD NE CZ NH1 NH2
REMARK 470 LYS A 52 CE NZ
REMARK 470 GLU A 56 CG CD OE1 OE2
REMARK 470 TYR A 63 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 GLU A 69 CG CD OE1 OE2
REMARK 470 ARG A 73 CD NE CZ NH1 NH2
REMARK 470 GLN A 94 CG CD OE1 NE2
REMARK 470 LYS A 97 CG CD CE NZ
REMARK 470 ASN A 99 CG OD1 ND2
REMARK 470 GLU A 123 CD OE1 OE2
REMARK 470 LYS A 124 CE NZ
REMARK 470 GLU A 129 CG CD OE1 OE2
REMARK 470 GLU A 134 CG CD OE1 OE2
REMARK 470 LYS A 152 CG CD CE NZ
REMARK 470 ASP A 156 CG OD1 OD2
REMARK 470 LYS A 180 CD CE NZ
REMARK 470 LYS A 193 CG CD CE NZ
REMARK 470 GLU A 196 CD OE1 OE2
REMARK 470 LYS A 207 CD CE NZ
REMARK 470 LYS A 212 CD CE NZ
REMARK 470 GLU A 215 CD OE1 OE2
REMARK 470 GLU A 227 CG CD OE1 OE2
REMARK 470 GLU A 230 CG CD OE1 OE2
REMARK 470 GLU A 248 CG CD OE1 OE2
REMARK 470 GLU A 255 CD OE1 OE2
REMARK 470 LYS A 261 CD CE NZ
REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 282 CD NE CZ NH1 NH2
REMARK 470 LYS A 300 CG CD CE NZ
REMARK 470 VAL A 303 CG1 CG2
REMARK 470 SER A 304 OG
REMARK 470 LYS A 308 CG CD CE NZ
REMARK 470 GLU A 323 CD OE1 OE2
REMARK 470 LYS A 333 NZ
REMARK 470 GLU A 336 CD OE1 OE2
REMARK 470 GLU A 337 CD OE1 OE2
REMARK 470 GLN A 338 CG CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 28 -159.44 -163.58
REMARK 500 GLU A 138 0.60 -59.34
REMARK 500 THR A 139 -34.63 -134.55
REMARK 500 SER A 302 90.12 -161.94
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0QK A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0QK A 502
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4EQZ RELATED DB: PDB
REMARK 900 RELATED ID: 4ER0 RELATED DB: PDB
REMARK 900 RELATED ID: 4ER3 RELATED DB: PDB
REMARK 900 RELATED ID: 4ER6 RELATED DB: PDB
REMARK 900 RELATED ID: 4ER7 RELATED DB: PDB
DBREF 4ER5 A 1 412 UNP Q8TEK3 DOT1L_HUMAN 1 412
SEQADV 4ER5 GLY A 0 UNP Q8TEK3 EXPRESSION TAG
SEQRES 1 A 413 GLY MET GLY GLU LYS LEU GLU LEU ARG LEU LYS SER PRO
SEQRES 2 A 413 VAL GLY ALA GLU PRO ALA VAL TYR PRO TRP PRO LEU PRO
SEQRES 3 A 413 VAL TYR ASP LYS HIS HIS ASP ALA ALA HIS GLU ILE ILE
SEQRES 4 A 413 GLU THR ILE ARG TRP VAL CYS GLU GLU ILE PRO ASP LEU
SEQRES 5 A 413 LYS LEU ALA MET GLU ASN TYR VAL LEU ILE ASP TYR ASP
SEQRES 6 A 413 THR LYS SER PHE GLU SER MET GLN ARG LEU CYS ASP LYS
SEQRES 7 A 413 TYR ASN ARG ALA ILE ASP SER ILE HIS GLN LEU TRP LYS
SEQRES 8 A 413 GLY THR THR GLN PRO MET LYS LEU ASN THR ARG PRO SER
SEQRES 9 A 413 THR GLY LEU LEU ARG HIS ILE LEU GLN GLN VAL TYR ASN
SEQRES 10 A 413 HIS SER VAL THR ASP PRO GLU LYS LEU ASN ASN TYR GLU
SEQRES 11 A 413 PRO PHE SER PRO GLU VAL TYR GLY GLU THR SER PHE ASP
SEQRES 12 A 413 LEU VAL ALA GLN MET ILE ASP GLU ILE LYS MET THR ASP
SEQRES 13 A 413 ASP ASP LEU PHE VAL ASP LEU GLY SER GLY VAL GLY GLN
SEQRES 14 A 413 VAL VAL LEU GLN VAL ALA ALA ALA THR ASN CYS LYS HIS
SEQRES 15 A 413 HIS TYR GLY VAL GLU LYS ALA ASP ILE PRO ALA LYS TYR
SEQRES 16 A 413 ALA GLU THR MET ASP ARG GLU PHE ARG LYS TRP MET LYS
SEQRES 17 A 413 TRP TYR GLY LYS LYS HIS ALA GLU TYR THR LEU GLU ARG
SEQRES 18 A 413 GLY ASP PHE LEU SER GLU GLU TRP ARG GLU ARG ILE ALA
SEQRES 19 A 413 ASN THR SER VAL ILE PHE VAL ASN ASN PHE ALA PHE GLY
SEQRES 20 A 413 PRO GLU VAL ASP HIS GLN LEU LYS GLU ARG PHE ALA ASN
SEQRES 21 A 413 MET LYS GLU GLY GLY ARG ILE VAL SER SER LYS PRO PHE
SEQRES 22 A 413 ALA PRO LEU ASN PHE ARG ILE ASN SER ARG ASN LEU SER
SEQRES 23 A 413 ASP ILE GLY THR ILE MET ARG VAL VAL GLU LEU SER PRO
SEQRES 24 A 413 LEU LYS GLY SER VAL SER TRP THR GLY LYS PRO VAL SER
SEQRES 25 A 413 TYR TYR LEU HIS THR ILE ASP ARG THR ILE LEU GLU ASN
SEQRES 26 A 413 TYR PHE SER SER LEU LYS ASN PRO LYS LEU ARG GLU GLU
SEQRES 27 A 413 GLN GLU ALA ALA ARG ARG ARG GLN GLN ARG GLU SER LYS
SEQRES 28 A 413 SER ASN ALA ALA THR PRO THR LYS GLY PRO GLU GLY LYS
SEQRES 29 A 413 VAL ALA GLY PRO ALA ASP ALA PRO MET ASP SER GLY ALA
SEQRES 30 A 413 GLU GLU GLU LYS ALA GLY ALA ALA THR VAL LYS LYS PRO
SEQRES 31 A 413 SER PRO SER LYS ALA ARG LYS LYS LYS LEU ASN LYS LYS
SEQRES 32 A 413 GLY ARG LYS MET ALA GLY ARG LYS ARG GLY
HET 0QK A 501 39
HET 0QK A 502 39
HET UNX A 503 1
HET UNX A 504 1
HET UNX A 505 1
HET UNX A 506 1
HET UNX A 507 1
HETNAM 0QK 7-{5-[(3-{[(4-TERT-BUTYLPHENYL)CARBAMOYL]AMINO}PROPYL)
HETNAM 2 0QK (PROPAN-2-YL)AMINO]-5-DEOXY-BETA-D-RIBOFURANOSYL}-7H-
HETNAM 3 0QK PYRROLO[2,3-D]PYRIMIDIN-4-AMINE
HETNAM UNX UNKNOWN ATOM OR ION
FORMUL 2 0QK 2(C28 H41 N7 O4)
FORMUL 4 UNX 5(X)
FORMUL 9 HOH *20(H2 O)
HELIX 1 1 ASP A 32 ILE A 48 1 17
HELIX 2 2 ILE A 48 MET A 55 1 8
HELIX 3 3 SER A 67 GLY A 91 1 25
HELIX 4 4 SER A 103 VAL A 119 1 17
HELIX 5 5 ASP A 121 LEU A 125 5 5
HELIX 6 6 THR A 139 ILE A 151 1 13
HELIX 7 7 GLY A 167 THR A 177 1 11
HELIX 8 8 ALA A 188 GLY A 210 1 23
HELIX 9 9 SER A 225 ASN A 234 1 10
HELIX 10 10 GLY A 246 ALA A 258 1 13
HELIX 11 11 ASN A 280 LEU A 284 5 5
HELIX 12 12 ASP A 286 THR A 289 5 4
HELIX 13 13 ARG A 319 ASN A 331 1 13
HELIX 14 14 ASN A 331 GLU A 339 1 9
SHEET 1 A 2 LEU A 5 LEU A 9 0
SHEET 2 A 2 ALA A 18 TRP A 22 -1 O TYR A 20 N LEU A 7
SHEET 1 B 7 TYR A 216 ARG A 220 0
SHEET 2 B 7 HIS A 181 GLU A 186 1 N GLY A 184 O GLU A 219
SHEET 3 B 7 LEU A 158 LEU A 162 1 N PHE A 159 O TYR A 183
SHEET 4 B 7 VAL A 237 VAL A 240 1 O PHE A 239 N VAL A 160
SHEET 5 B 7 ARG A 265 SER A 268 1 O VAL A 267 N ILE A 238
SHEET 6 B 7 TYR A 313 ILE A 317 -1 O TYR A 313 N SER A 268
SHEET 7 B 7 MET A 291 GLU A 295 -1 N VAL A 294 O LEU A 314
CISPEP 1 TRP A 22 PRO A 23 0 -1.88
CISPEP 2 GLU A 129 PRO A 130 0 7.21
SITE 1 AC1 16 TYR A 128 LEU A 143 ASP A 161 GLY A 163
SITE 2 AC1 16 SER A 164 GLY A 165 VAL A 169 GLU A 186
SITE 3 AC1 16 LYS A 187 GLY A 221 ASP A 222 PHE A 223
SITE 4 AC1 16 ASN A 241 PHE A 245 SER A 268 SER A 269
SITE 1 AC2 13 GLU A 46 LEU A 111 TYR A 115 PRO A 122
SITE 2 AC2 13 GLU A 123 LEU A 125 ASN A 126 ASN A 127
SITE 3 AC2 13 TYR A 128 PRO A 133 TYR A 136 GLY A 137
SITE 4 AC2 13 GLN A 168
CRYST1 150.605 150.605 53.179 90.00 90.00 120.00 P 65 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006640 0.003834 0.000000 0.00000
SCALE2 0.000000 0.007667 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018804 0.00000
(ATOM LINES ARE NOT SHOWN.)
END
