KEGG   Penicillium digitatum: PDIP_51970
Entry
PDIP_51970        CDS       T04849                                 
Name
(RefSeq) RNA binding protein, putative
  KO
K12881  THO complex subunit 4
Organism
pdp  Penicillium digitatum
Pathway
pdp03013  Nucleocytoplasmic transport
pdp03015  mRNA surveillance pathway
pdp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pdp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PDIP_51970
  09122 Translation
   03013 Nucleocytoplasmic transport
    PDIP_51970
   03015 mRNA surveillance pathway
    PDIP_51970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdp03019]
    PDIP_51970
   03041 Spliceosome [BR:pdp03041]
    PDIP_51970
Messenger RNA biogenesis [BR:pdp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     PDIP_51970
    TREX complex
     PDIP_51970
Spliceosome [BR:pdp03041]
 Complex C
  Other components
   EJC/TREX
    PDIP_51970
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PDIP_51970
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 26233514
NCBI-ProteinID: XP_014534191
UniProt: K9FSF9
Position
Unknown
AA seq 345 aa
MDRSLDEIIAEDTQNTGRPSGGSGGPRRHNNPGRRHERDGVRKPYTSDRVDLNLDWVHDK
FDDDRSRPSRGGRRGRDGPDIDRSSTLTKVRVENLHYDITETDLEVGFNCPILNTHARAP
LTNFFAEQDLFGRIGPVSELTVSYDRAGRSEGVAYITYARLKDAHTSIQEYDGANAKGQP
IRLSLIPGRRERNPLDSAQRPRHSLLDRVERPRDDRSMSPENNADGRRRRGGGRAHRSDV
TKPAPDNIDRYVPGQRSHQRSPNRRGGGRRGGRDNRSQQTDGSNRRSNARPRKTQEELDQ
EMEDYWGGANNAGGEATAPAQDAAPQQTAPAPSAPAADDDIDMIE
NT seq 1038 nt   +upstreamnt  +downstreamnt
atggaccgcagcttggacgagattatcgctgaagacacgcagaacactggtcgcccctca
ggtggcagtggtggtcctcgtcgtcacaacaaccccggtcgtcgccacgagcgcgatggc
gtcagaaagccatacacttcagaccgtgtcgatctcaacctcgactgggtgcacgacaaa
tttgacgacgaccgatcccgcccgtcccgtggaggccgcagaggccgcgacggacctgat
atcgatcgctctagcacactgaccaaggttcgcgtggaaaacctccactatgacattacc
gaaaccgacctcgaagtaggttttaactgccccatcctcaacacccacgcaagagcacct
ctaaccaacttcttcgctgaacaggatctcttcggccggattggacctgtttctgagctt
accgtctcttatgaccgcgctggacgctccgagggagttgcttacatcacatacgcccgc
ctgaaggacgcacacacttcaattcaggagtatgacggagccaacgccaagggccagccc
atccgtctttctctcatcccgggccgccgtgaacgtaaccccctagactccgcacagcgt
cctagacacagtcttctggaccgcgtcgagcgtccccgcgacgaccgcagcatgagcccc
gagaacaatgctgatggccgacgccgccgtggtggcggccgtgctcatcgcagcgacgtc
actaagcccgccccagacaacatcgaccgttatgtccccgggcaacgctcccatcagcgc
tcccctaaccgccgcggcggaggcagacgtggtggacgtgacaaccgctcccaacagact
gatggatccaaccgccgatccaatgcccgtccgcgcaagactcaggaggagttggaccaa
gagatggaagattactggggtggtgcgaacaacgccggcggtgaagcgactgcacccgct
caggacgcagccccccagcagactgctccggcccccagcgcacccgctgccgacgacgat
atcgatatgattgagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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